; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G10380 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G10380
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDExH-box ATP-dependent RNA helicase DExH6 isoform X1
Genome locationClcChr07:24944684..24946386
RNA-Seq ExpressionClc07G10380
SyntenyClc07G10380
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR007502 - Helicase-associated domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022978754.1 DExH-box ATP-dependent RNA helicase DExH6 isoform X1 [Cucurbita maxima]3.1e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

XP_022978767.1 DExH-box ATP-dependent RNA helicase DExH6 isoform X2 [Cucurbita maxima]3.1e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

XP_022978776.1 DExH-box ATP-dependent RNA helicase DExH6 isoform X3 [Cucurbita maxima]3.1e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

XP_022978783.1 DExH-box ATP-dependent RNA helicase DExH6 isoform X4 [Cucurbita maxima]3.1e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

XP_038906450.1 DExH-box ATP-dependent RNA helicase DExH6 isoform X4 [Benincasa hispida]3.1e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

TrEMBL top hitse value%identityAlignment
A0A6J1FPD2 DExH-box ATP-dependent RNA helicase DExH6 isoform X24.4e-3785.58Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCL+PALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

A0A6J1ILZ9 DExH-box ATP-dependent RNA helicase DExH6 isoform X21.5e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

A0A6J1INX6 DExH-box ATP-dependent RNA helicase DExH6 isoform X11.5e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

A0A6J1INZ2 DExH-box ATP-dependent RNA helicase DExH6 isoform X31.5e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

A0A6J1IR83 DExH-box ATP-dependent RNA helicase DExH6 isoform X41.5e-3786.54Show/hide
Query:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV
        FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKK    K  L     G   QLAV
Subjt:  FDTIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAV

Query:  VAAF
        VAAF
Subjt:  VAAF

SwissProt top hitse value%identityAlignment
B2RR83 3'-5' RNA helicase YTHDC21.5e-1343.9Show/hide
Query:  IRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQ
        +RNA+ +L+ I A+   E LTELG  L  LPV P   KM++ A+++ CLDP LT+AC   Y+DPF LP   S+++  +L ++
Subjt:  IRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQ

F4IDQ6 DExH-box ATP-dependent RNA helicase DExH21.4e-2457.84Show/hide
Query:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVA
        +I NA+++L+DIGAL+ +E+LTELG+K G LPVHP  SKM+ FAIL+NCLDPAL LACA+D KDPFT+P+ P +RKK    K  L          LA VA
Subjt:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVA

Query:  AF
        AF
Subjt:  AF

F4INY4 DExH-box ATP-dependent RNA helicase DExH61.8e-2763.73Show/hide
Query:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVA
        +I NA+ +LQDIGAL+  E+LTELGEK G LPVHP+ SKML FA+L+NCLDPALTLACA+DYK+PFT+PM P ER+K    K  L     G    LAVVA
Subjt:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVA

Query:  AF
        AF
Subjt:  AF

Q5R746 3'-5' RNA helicase YTHDC21.5e-1343.9Show/hide
Query:  IRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQ
        +RNA+ +L+ I A+   E LTELG  L  LPV P   KM++ A+++ CLDP LT+AC   Y+DPF LP   S+++  +L ++
Subjt:  IRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQ

Q9H6S0 3'-5' RNA helicase YTHDC21.5e-1343.9Show/hide
Query:  IRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQ
        +RNA+ +L+ I A+   E LTELG  L  LPV P   KM++ A+++ CLDP LT+AC   Y+DPF LP   S+++  +L ++
Subjt:  IRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQ

Arabidopsis top hitse value%identityAlignment
AT1G06670.1 nuclear DEIH-boxhelicase1.0e-2557.84Show/hide
Query:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVA
        +I NA+++L+DIGAL+ +E+LTELG+K G LPVHP  SKM+ FAIL+NCLDPAL LACA+D KDPFT+P+ P +RKK    K  L          LA VA
Subjt:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVA

Query:  AF
        AF
Subjt:  AF

AT1G48650.1 DEA(D/H)-box RNA helicase family protein4.8e-1246.38Show/hide
Query:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLP
        +++NA+  L+ IGAL  DE LT LG+ L  LPV P   KMLI   + NCLDP +T+      +DPF +P
Subjt:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLP

AT1G48650.2 DEA(D/H)-box RNA helicase family protein4.8e-1246.38Show/hide
Query:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLP
        +++NA+  L+ IGAL  DE LT LG+ L  LPV P   KMLI   + NCLDP +T+      +DPF +P
Subjt:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLP

AT2G30800.1 helicase in vascular tissue and tapetum1.3e-2863.73Show/hide
Query:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVA
        +I NA+ +LQDIGAL+  E+LTELGEK G LPVHP+ SKML FA+L+NCLDPALTLACA+DYK+PFT+PM P ER+K    K  L     G    LAVVA
Subjt:  TIRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVA

Query:  AF
        AF
Subjt:  AF

AT2G35920.1 RNA helicase family protein2.4e-1147.83Show/hide
Query:  IRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPM
        + NAI +L+ IGAL+  E+LT LG  L +LPV P   KML+   +  C++PALT+A A  Y+ PF LP+
Subjt:  IRNAILVLQDIGALSLDEKLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCAGTGTCAACTGGGGAAAATTCAAGAAAAACAAGAACGGACTCGAAGCTGTGAATTTGTACACTAGAAAAACCAATGAGTCTCGGTTAAAGCTCATGGGTGA
ACATGAAGAAGTAAAAAATGAGAGACAGTGTGGTACAAAAACTGATAAAGACGAAGAGAACAAAAAAAGGGGAAATCGTGTGATGAGGAAGACCAGTCATGCAAGGAACA
GGATGGAGCGAAGTTCGAAAGGGAAAGAATTGTTTTTTGATACTATCCGTAATGCAATCTTAGTTCTCCAAGATATTGGGGCTTTGTCACTAGATGAGAAACTGACTGAG
CTTGGGGAGAAACTAGGTTCATTGCCTGTCCATCCAGTAACAAGCAAGATGCTTATCTTCGCCATATTGATGAACTGCCTAGATCCTGCTCTAACTCTGGCTTGTGCTTC
TGACTACAAGGACCCTTTCACTCTTCCAATGTTACCAAGCGAAAGAAAGAAGCTGCTGCTGCTAAAGCAGAGCTTGCTTCATTGTATGGTGGGCATAGTGATTCAACTGG
CTGTTGTAGCTGCATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTCAGTGTCAACTGGGGAAAATTCAAGAAAAACAAGAACGGACTCGAAGCTGTGAATTTGTACACTAGAAAAACCAATGAGTCTCGGTTAAAGCTCATGGGTGA
ACATGAAGAAGTAAAAAATGAGAGACAGTGTGGTACAAAAACTGATAAAGACGAAGAGAACAAAAAAAGGGGAAATCGTGTGATGAGGAAGACCAGTCATGCAAGGAACA
GGATGGAGCGAAGTTCGAAAGGGAAAGAATTGTTTTTTGATACTATCCGTAATGCAATCTTAGTTCTCCAAGATATTGGGGCTTTGTCACTAGATGAGAAACTGACTGAG
CTTGGGGAGAAACTAGGTTCATTGCCTGTCCATCCAGTAACAAGCAAGATGCTTATCTTCGCCATATTGATGAACTGCCTAGATCCTGCTCTAACTCTGGCTTGTGCTTC
TGACTACAAGGACCCTTTCACTCTTCCAATGTTACCAAGCGAAAGAAAGAAGCTGCTGCTGCTAAAGCAGAGCTTGCTTCATTGTATGGTGGGCATAGTGATTCAACTGG
CTGTTGTAGCTGCATTTTGA
Protein sequenceShow/hide protein sequence
MKFSVNWGKFKKNKNGLEAVNLYTRKTNESRLKLMGEHEEVKNERQCGTKTDKDEENKKRGNRVMRKTSHARNRMERSSKGKELFFDTIRNAILVLQDIGALSLDEKLTE
LGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACASDYKDPFTLPMLPSERKKLLLLKQSLLHCMVGIVIQLAVVAAF