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Clc07G10885 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G10885
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLate embryogenesis abundant protein
Genome locationClcChr07:25506072..25506404
RNA-Seq ExpressionClc07G10885
SyntenyClc07G10885
Gene Ontology termsNA
InterPro domainsIPR004926 - Late embryogenesis abundant protein, LEA_3 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044980.1 uncharacterized protein E6C27_scaffold74G002880 [Cucumis melo var. makuwa]2.1e-3891.86Show/hide
Query:  FSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        F RPIGRKGFHRKSSSPDMMRE+VETESKELKSN+SHV GEATPWVLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Subjt:  FSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
TYK16491.1 uncharacterized protein E5676_scaffold21G002970 [Cucumis melo var. makuwa]2.1e-3891.86Show/hide
Query:  FSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        F RPIGRKGFHRKSSSPDMMRE+VETESKELKSN+SHV GEATPWVLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Subjt:  FSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
XP_004148978.1 uncharacterized protein LOC101205531 [Cucumis sativus]4.8e-3888.64Show/hide
Query:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        + F +PIGRKGFHRKSSSPDMMRE+VETESKELKSN+SHV GE TPWVLDGRTGIYYPKGHEKVL SIPDGGGA VNTQVNWFNDENI
Subjt:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
XP_008451903.1 PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo]2.8e-3888.64Show/hide
Query:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        + F +PIGRKGFHRKSSSPDMMRE+VETESKELKSN+SHV GEATPWVLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Subjt:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
XP_038884831.1 uncharacterized protein LOC120075477 [Benincasa hispida]7.4e-3989.77Show/hide
Query:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        + F +PIGRKGFHRKSSSPDM+RE+VETESKE+KSNKSHV GEATPWVLDGRTGIYYPKGHEKVLESIPDGGGA VNTQVNWFNDENI
Subjt:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
TrEMBL top hitse value%identityAlignment
A0A0A0KX78 Uncharacterized protein2.3e-3888.64Show/hide
Query:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        + F +PIGRKGFHRKSSSPDMMRE+VETESKELKSN+SHV GE TPWVLDGRTGIYYPKGHEKVL SIPDGGGA VNTQVNWFNDENI
Subjt:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
A0A1S3BTQ2 uncharacterized protein LOC1034930561.4e-3888.64Show/hide
Query:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        + F +PIGRKGFHRKSSSPDMMRE+VETESKELKSN+SHV GEATPWVLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Subjt:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
A0A5A7TP55 Uncharacterized protein1.0e-3891.86Show/hide
Query:  FSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        F RPIGRKGFHRKSSSPDMMRE+VETESKELKSN+SHV GEATPWVLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Subjt:  FSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
A0A5D3CX31 Uncharacterized protein1.0e-3891.86Show/hide
Query:  FSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
        F RPIGRKGFHRKSSSPDMMRE+VETESKELKSN+SHV GEATPWVLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Subjt:  FSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI
A0A6J1J914 uncharacterized protein LOC1114828459.7e-3787.36Show/hide
Query:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDEN
        + F +PIGRKGFHRKSSSPDMMRE+VETESKELKSNKS V GE TPWVLDGRTGIYYPKGHE VLESIP+GGGA VNTQVNWFNDEN
Subjt:  AFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDEN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73120.1 unknown protein2.6e-1038.04Show/hide
Query:  FSRPIGRKGFHRKSSSPDMMREKVETE----SKELKSNK-----SHVEGEATPWVLDGRTGIYYPKGHEKVLESI-PDGGGAVVNTQVNWFN
        F +P+ RK  H+KS+S D++R+ V+TE     +E+K+ +           A+ WV    TGIYYPKG EKV++ + P   G+  +  VNWF+
Subjt:  FSRPIGRKGFHRKSSSPDMMREKVETE----SKELKSNK-----SHVEGEATPWVLDGRTGIYYPKGHEKVLESI-PDGGGAVVNTQVNWFN
AT3G19550.1 unknown protein6.3e-0429.85Show/hide
Query:  GRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGA
        GR G   K++  + M   +    +++  +     GE   WV   RTGI++P G E V+E +P+G  +
Subjt:  GRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAACACAACACGTGGAATATCGATACAGAATGTTACCTATTTTTCTGATTCTGATTCGGTTGCATTCTTTAGCAGACCGATTGGGCGAAAGGGCTTCCACAGGAA
AAGCTCTTCTCCAGATATGATGAGGGAGAAAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAATAAGAGCCATGTGGAGGGTGAGGCAACTCCTTGGGTGCTTGACGGGC
GAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTCGAGAGCATTCCCGATGGCGGTGGGGCTGTAGTTAACACCCAGGTCAATTGGTTTAACGATGAAAACATT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTATAACACAACACGTGGAATATCGATACAGAATGTTACCTATTTTTCTGATTCTGATTCGGTTGCATTCTTTAGCAGACCGATTGGGCGAAAGGGCTTCCACAGGAA
AAGCTCTTCTCCAGATATGATGAGGGAGAAAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAATAAGAGCCATGTGGAGGGTGAGGCAACTCCTTGGGTGCTTGACGGGC
GAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTCGAGAGCATTCCCGATGGCGGTGGGGCTGTAGTTAACACCCAGGTCAATTGGTTTAACGATGAAAACATT
TAA
Protein sequenceShow/hide protein sequence
MYNTTRGISIQNVTYFSDSDSVAFFSRPIGRKGFHRKSSSPDMMREKVETESKELKSNKSHVEGEATPWVLDGRTGIYYPKGHEKVLESIPDGGGAVVNTQVNWFNDENI