; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G11440 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G11440
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionrho GTPase-activating protein gacH
Genome locationClcChr07:26129673..26130814
RNA-Seq ExpressionClc07G11440
SyntenyClc07G11440
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR012682 - Transcription regulator Myc, N-terminal
IPR036020 - WW domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018415.1 hypothetical protein SDJN02_20283 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-5766.83Show/hide
Query:  SRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYS
        SR   M T+T ALE SLQ CSLSH   QA     SDS    +   +H      LNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR  TEDDQYS
Subjt:  SRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYS

Query:  ED-YCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHFDRSENDIP
        +D YCY   DDDDDD+SSYDSEESSTESSN K K K              EE++E++VLVV GCKRC MYFMVPKHLE+CPKC +G+LLHFDRSENDIP
Subjt:  ED-YCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHFDRSENDIP

XP_004152315.3 serine/threonine-protein kinase stk11 homolog [Cucumis sativus]1.6e-6871.04Show/hide
Query:  VANMGTITEALECSLQKCSLSH--------------HQTQAVSSSSSDSSNNKNPSSIH-----QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNG
        VA MGTITEALECSLQKCSL+H              HQ   +SSSSS SS + + SSIH     QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNG
Subjt:  VANMGTITEALECSLQKCSLSH--------------HQTQAVSSSSSDSSNNKNPSSIH-----QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNG

Query:  MKAKEDPRSIT-----EDDQYSEDYCYYYSDD--DDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHL
        MKAKEDPRS       +DD+YSEDYCYYYSDD  ++DD SSYDSEESSTES+N +KKKK FVV          EEEEEKDVLVVGGCKRCLMYFMVPKHL
Subjt:  MKAKEDPRSIT-----EDDQYSEDYCYYYSDD--DDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHL

Query:  EDCPKC-TGQLLHFDRSENDI
        +DCPKC  GQLLHFDRS+N I
Subjt:  EDCPKC-TGQLLHFDRSENDI

XP_008454114.1 PREDICTED: knob-associated histidine-rich protein-like [Cucumis melo]1.6e-6870Show/hide
Query:  SSRVANMGTITEALECSLQKCSLSH------------HQTQAVSSSSSDSSNNKNPSSI-----HQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRN
        SSRVA MGTITEALECSLQKCSL+H            HQ   +SSSSS SS++ + SS      HQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRN
Subjt:  SSRVANMGTITEALECSLQKCSLSH------------HQTQAVSSSSSDSSNNKNPSSI-----HQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRN

Query:  GMKAKEDPRSIT-----EDDQYSEDYCYYYSD------DDDDDNSSYDSEESSTESSN----KKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCL
        GMKAKEDPRS       +DD+YSEDYCYYYSD      ++DDD SSYDSEESSTES+N    KKKKKK FVV         EE EEEKDVLVVGGCKRCL
Subjt:  GMKAKEDPRSIT-----EDDQYSEDYCYYYSD------DDDDDNSSYDSEESSTESSN----KKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCL

Query:  MYFMVPKHLEDCPKC-TGQLLHFDRSENDI
        MYFMVPKHL+DCPKC  GQLLHFDRS+N I
Subjt:  MYFMVPKHLEDCPKC-TGQLLHFDRSENDI

XP_022955477.1 uncharacterized protein LOC111457490 isoform X2 [Cucurbita moschata]5.8e-5867.68Show/hide
Query:  SRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYS
        SR   M T+T ALE SL+ CSLSH   QA     SDS    +   +H      LNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR  TEDDQYS
Subjt:  SRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYS

Query:  EDYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHFDRSENDIP
        +DY Y YSDDDDDD+SSYDSEESST SSN K K K              EE++E+DVLVV GCKRCLMYFMVPKHLE+CPKC +G+LLHFDRSENDIP
Subjt:  EDYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHFDRSENDIP

XP_038880672.1 uncharacterized protein LOC120072288 [Benincasa hispida]1.2e-7681.28Show/hide
Query:  MSSRVANMGTITEALECSLQKCSLSHHQT---QAVSSSSSDSSNNKNPSSIHQ-STSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSIT
        MSSRVANMGTITEALECSL+KCSLSHHQT   Q   SSS  SSNNKN SSIHQ +T+LDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRS  
Subjt:  MSSRVANMGTITEALECSLQKCSLSHHQT---QAVSSSSSDSSNNKNPSSIHQ-STSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSIT

Query:  EDDQYSEDYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQLLHFDRSEN
        EDD+YSEDYCYYYSDDDD   SSYDSEESSTESSN     KKFV           EEEEEKDVLVVGGCKRC MYFMVPK+LEDCPKC GQLLHFDRSEN
Subjt:  EDDQYSEDYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQLLHFDRSEN

Query:  DIP
        DIP
Subjt:  DIP

TrEMBL top hitse value%identityAlignment
A0A0A0KTY3 Uncharacterized protein4.3e-6773.91Show/hide
Query:  VANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIH-----QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSIT---
        VA MGTITEALECSLQK     HQ   +SSSSS SS + + SSIH     QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRS     
Subjt:  VANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIH-----QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSIT---

Query:  --EDDQYSEDYCYYYSDD--DDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHF
          +DD+YSEDYCYYYSDD  ++DD SSYDSEESSTES+N +KKKK FVV          EEEEEKDVLVVGGCKRCLMYFMVPKHL+DCPKC  GQLLHF
Subjt:  --EDDQYSEDYCYYYSDD--DDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHF

Query:  DRSENDI
        DRS+N I
Subjt:  DRSENDI

A0A1S3BXV1 knob-associated histidine-rich protein-like7.8e-6970Show/hide
Query:  SSRVANMGTITEALECSLQKCSLSH------------HQTQAVSSSSSDSSNNKNPSSI-----HQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRN
        SSRVA MGTITEALECSLQKCSL+H            HQ   +SSSSS SS++ + SS      HQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRN
Subjt:  SSRVANMGTITEALECSLQKCSLSH------------HQTQAVSSSSSDSSNNKNPSSI-----HQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRN

Query:  GMKAKEDPRSIT-----EDDQYSEDYCYYYSD------DDDDDNSSYDSEESSTESSN----KKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCL
        GMKAKEDPRS       +DD+YSEDYCYYYSD      ++DDD SSYDSEESSTES+N    KKKKKK FVV         EE EEEKDVLVVGGCKRCL
Subjt:  GMKAKEDPRSIT-----EDDQYSEDYCYYYSD------DDDDDNSSYDSEESSTESSN----KKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCL

Query:  MYFMVPKHLEDCPKC-TGQLLHFDRSENDI
        MYFMVPKHL+DCPKC  GQLLHFDRS+N I
Subjt:  MYFMVPKHLEDCPKC-TGQLLHFDRSENDI

A0A6J1GTR7 uncharacterized protein LOC111457490 isoform X22.8e-5867.68Show/hide
Query:  SRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYS
        SR   M T+T ALE SL+ CSLSH   QA     SDS    +   +H      LNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR  TEDDQYS
Subjt:  SRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYS

Query:  EDYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHFDRSENDIP
        +DY Y YSDDDDDD+SSYDSEESST SSN K K K              EE++E+DVLVV GCKRCLMYFMVPKHLE+CPKC +G+LLHFDRSENDIP
Subjt:  EDYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHFDRSENDIP

A0A6J1I5N3 uncharacterized protein LOC1114708947.6e-5668.53Show/hide
Query:  NMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIH---QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYSE
        NM TIT ALE SLQ CSLS H+ +          +  N SS H     T+LDLNSH+SLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITE D YSE
Subjt:  NMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIH---QSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYSE

Query:  DYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCT-GQLLHFDRSENDIP
        D  YYY DDDD      DS+ESSTESSN   K  K     EE+EE+EEEEEEE+DVLVV GCK CLMYFMVPK +EDCPKC+ GQLLHFDRSEN+IP
Subjt:  DYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCT-GQLLHFDRSENDIP

A0A6J1IQL3 methionine aminopeptidase 2-like9.0e-5766.5Show/hide
Query:  SRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYS
        SR   M T+T ALE SLQ CSLSH   QA     SDS    +   +H      LNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPR  TEDDQYS
Subjt:  SRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYS

Query:  EDYCYYYSD-----DDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHFDRSEN
        +DY Y YSD     DDDDD+SSYDSEESSTESSN K K K              EE++E+DVLVV GCKRCLMYFMVPKHLE+CPKC +G+LL+FDRSEN
Subjt:  EDYCYYYSD-----DDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKC-TGQLLHFDRSEN

Query:  DIP
        DIP
Subjt:  DIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G28070.1 unknown protein1.6e-2944.62Show/hide
Query:  MGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYSEDYCY
        M  ITE LE S+Q CSL   +     SS  D     +         L+L+SH S+P H EQCLDLKTGEIYY +W +GM+ KEDPR       Y++    
Subjt:  MGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYSEDYCY

Query:  YYSD---DDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQLLHFDRSENDIP
          S      ++ +S Y+SEESS+ESS   +K  K              EE+++DVLVV GCK CLMYFMVPK  +DCPKC  QLLHFD+  +  P
Subjt:  YYSD---DDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQLLHFDRSENDIP

AT2G33510.1 CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202)4.9e-4758.95Show/hide
Query:  RVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYSE
        +  NM TITE+LE S+  CSL+  + + V      SS+N++ + I   T L+LNSHLSLP HWEQCLDLKTGEIYYINW+NGM+ KEDPR +   D  S 
Subjt:  RVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYSE

Query:  DYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQLLHFDR
        D   Y +   ++D+S YDSEESS+ESS   ++  K     EEEEEEEEEEEEE+DVLVV GCK C MYFMVPK +EDCPKC  QLLHFDR
Subjt:  DYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQLLHFDR

AT2G33510.2 unknown protein5.1e-4454.63Show/hide
Query:  RVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLK---------------TGEIYYINWRNGMKA
        +  NM TITE+LE S+  CSL+  + + V      SS+N++ + I   T L+LNSHLSLP HWEQCLDLK               TGEIYYINW+NGM+ 
Subjt:  RVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLK---------------TGEIYYINWRNGMKA

Query:  KEDPRSITEDDQYSEDYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQL
        KEDPR +   D  S D   Y +   ++D+S YDSEESS+ESS   ++  K     EEEEEEEEEEEEE+DVLVV GCK C MYFMVPK +EDCPKC  QL
Subjt:  KEDPRSITEDDQYSEDYCYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQL

Query:  LHFDR
        LHFDR
Subjt:  LHFDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGTAGAGTTGCAAATATGGGAACAATCACAGAAGCTTTAGAATGCTCTCTCCAAAAATGTTCCTTAAGCCATCATCAAACTCAAGCAGTTTCTTCTTCT
TCCTCAGATTCTTCCAACAACAAAAACCCTTCTTCTATTCATCAATCAACCTCTTTGGATCTCAACTCCCATCTCTCTTTGCCTTACCATTGGGAGCAATGTCTT
GATTTAAAGACAGGGGAGATATACTACATAAACTGGAGGAATGGAATGAAGGCAAAGGAAGATCCAAGGTCCATAACAGAAGATGACCAATACAGTGAAGATTAT
TGTTATTACTACTCGGACGACGATGACGACGACAACAGCTCTTACGACAGCGAAGAGTCGTCAACGGAGTCGTCAAACAAGAAGAAGAAGAAGAAGAAGTTTGTG
GTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGATGTTTTGGTGGTTGGAGGTTGCAAGAGATGCCTAATGTATTTTATGGTTCCC
AAACATCTTGAAGATTGCCCCAAATGCACTGGTCAGCTTCTCCATTTTGATCGCTCTGAAAATGACATTCCATGA
mRNA sequenceShow/hide mRNA sequence
TGTGGGTAGAAGAGAGTCTCGTATATATATTTATTTGTATTTTAATTTTTGGCAGTTTGTTGATTTCATCTTAAAGTTCTGAAGGGGAGCATTAGAAAGAGTAAT
GAAATGAGTAGTAGAGTTGCAAATATGGGAACAATCACAGAAGCTTTAGAATGCTCTCTCCAAAAATGTTCCTTAAGCCATCATCAAACTCAAGCAGTTTCTTCT
TCTTCCTCAGATTCTTCCAACAACAAAAACCCTTCTTCTATTCATCAATCAACCTCTTTGGATCTCAACTCCCATCTCTCTTTGCCTTACCATTGGGAGCAATGT
CTTGATTTAAAGACAGGGGAGATATACTACATAAACTGGAGGAATGGAATGAAGGCAAAGGAAGATCCAAGGTCCATAACAGAAGATGACCAATACAGTGAAGAT
TATTGTTATTACTACTCGGACGACGATGACGACGACAACAGCTCTTACGACAGCGAAGAGTCGTCAACGGAGTCGTCAAACAAGAAGAAGAAGAAGAAGAAGTTT
GTGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGATGTTTTGGTGGTTGGAGGTTGCAAGAGATGCCTAATGTATTTTATGGTT
CCCAAACATCTTGAAGATTGCCCCAAATGCACTGGTCAGCTTCTCCATTTTGATCGCTCTGAAAATGACATTCCATGAATCAGACAAACTTTCCTCTATTTTCAA
TTTCATTCCATTTTTCTTTTTTCTTTTTTCTTTTTTCATTGCCTTTTCTTCATGGGAAAAAGAGAGGAAGAAAGAGGAAGAAATTAAAAGAGAGAGAGAGAGAGA
GAGAGAAAATTCCTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MSSRVANMGTITEALECSLQKCSLSHHQTQAVSSSSSDSSNNKNPSSIHQSTSLDLNSHLSLPYHWEQCLDLKTGEIYYINWRNGMKAKEDPRSITEDDQYSEDY
CYYYSDDDDDDNSSYDSEESSTESSNKKKKKKKFVVEEEEEEEEEEEEEEEKDVLVVGGCKRCLMYFMVPKHLEDCPKCTGQLLHFDRSENDIP