CuGenDBv2

Gene ID	Clc07G12215
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Genome location	ClcChr07:27039045..27039349
RNA-Seq Expression	Clc07G12215
Synteny	Clc07G12215
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0022900 - electron transport chain (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR037232 - NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG4914316.1 hypothetical protein JHK87_051873 [Glycine soja]

7.2e-23

87.93

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKEEGV
        LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTR+EYGIDQP+EE +
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKEEGV

YP_009461730.1 NADH dehydrogenase 19 kDa subunit [Chionanthus parkinsonii]

1.2e-22

92.73

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

YP_009633419.1 NADH dehydrogenase 19 kDa subunit [Noronhia brevituba]

1.2e-22

92.73

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

YP_009635173.1 NADH dehydrogenase 19 kDa subunit [Chionanthus brassii]

1.2e-22

92.73

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

YP_009766596.1 NADH dehydrogenase subunit J [Cadellia pentastylis]

9.4e-23

94.55

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

TrEMBL top hits

e value

%identity

Alignment

A0A218KG31 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

6.0e-23

94.55

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKP+EWHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

A0A2L0VCR9 NADH-quinone oxidoreductase subunit C

6.0e-23

92.73

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

A0A4D5YC50 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

6.0e-23

92.73

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

A0A6H0E472 NADH-quinone oxidoreductase subunit C

4.6e-23

94.55

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

A0A6H0ET75 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

6.0e-23

94.55

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKP+EWHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

SwissProt top hits

e value

%identity

Alignment

B1A938 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

4.7e-25

90.91

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

B1NWF3 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

3.6e-25

92.73

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

Q09X14 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

3.6e-25

92.73

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

Q49KZ5 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

4.7e-25

90.91

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

Q4VZH2 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

1.6e-25

94.55

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKP+EWHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00420.1 NADH dehydrogenase subunit J

1.1e-24

87.27

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Query:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE
        LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG++Q +E
Subjt:  LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE

Sequences

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CDS sequence

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ATGAAATGGAGAACAGAGACTGAGAGTGGGAAAGCCATCTCCGGCCCAACTCTATTTATGAACTTACAAATAAAGCCCAAGGAATGGCATTCCATTGCAGTCATT
TTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCAGGCGGACTGTTAGCTAGTATGTATCATCTTACGAGAATCGAGTATGGT
ATAGATCAACCGAAAGAGGAAGGAGTTTACTTTTATTGA

mRNA sequence

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Protein sequence

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MKWRTETESGKAISGPTLFMNLQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKEEGVYFY

Clc07G12215 (gene) of Watermelon (cordophanus) v2 genome