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Clc07G12220 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G12220
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionpalmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like
Genome locationClcChr07:27047613..27048789
RNA-Seq ExpressionClc07G12220
SyntenyClc07G12220
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (molecular function)
InterPro domainsIPR015876 - Acyl-CoA desaturase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011652978.2 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic [Cucumis sativus]8.7e-3480.9Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK
        GK+ WKTNDLSTNNW        VGL+ FGEGWHNNHHAFEYSARHGLEWWEIDFGWYVI+FLQAIGVAT+VKVP Q HKKKLAMDE K
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK

XP_022153632.1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Momordica charantia]1.3e-3273.03Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK
        GK+PW+T DLS NNW       WV LVSFGEGWHNNHHAFEYSARHG+EWW+IDFGWYV++FL+AIG+ATNVKVPSQ  K+KLA+D  K
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK

XP_038903333.1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Benincasa hispida]1.6e-3266.67Show/hide
Query:  LAHNIFGEFRMSYM-GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM
        L H+ F      +M GK+PWKTND STNNW       W+ L++FGEGWHNNHHAFEYSAR G+EWW+ D GWYVI+FLQAIGVATNVKVPSQ+HK+KLA 
Subjt:  LAHNIFGEFRMSYM-GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM

Query:  DE
        D+
Subjt:  DE

XP_038903351.1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Benincasa hispida]1.6e-3266.67Show/hide
Query:  LAHNIFGEFRMSYM-GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM
        L H+ F      +M GK+PWKTND STNNW       W+ L++FGEGWHNNHHAFEYSAR G+EWW+ D GWYVI+FLQAIGVATNVKVPSQ+HK+KLA 
Subjt:  LAHNIFGEFRMSYM-GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM

Query:  DE
        D+
Subjt:  DE

XP_038903746.1 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Benincasa hispida]3.4e-3068.89Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKKN
        G R W T+DLSTNNW       W+ L+SFG+GWHNNHHAFEYSARHGLEWW+IDF WYVI+FLQAIGVAT VK+P+Q+HK++LAM + K+
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKKN

TrEMBL top hitse value%identityAlignment
A0A0A0KYG9 Uncharacterized protein4.2e-3480.9Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK
        GK+ WKTNDLSTNNW        VGL+ FGEGWHNNHHAFEYSARHGLEWWEIDFGWYVI+FLQAIGVAT+VKVP Q HKKKLAMDE K
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK

A0A6J1DHZ7 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like6.1e-3373.03Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK
        GK+PW+T DLS NNW       WV LVSFGEGWHNNHHAFEYSARHG+EWW+IDFGWYV++FL+AIG+ATNVKVPSQ  K+KLA+D  K
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK

A0A6J1E0E4 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like8.2e-3068.82Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKKNHMK
        GK+PWK  DLS NN        WVGL+ FGEGWHNNHHAFEYSAR GLEWW+IDFGWYVI  LQAIGVATNVKVPSQ+HK++L    +K+ +K
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKKNHMK

A0A6J1GV18 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like3.7e-3071.91Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK
        GK+PWKTNDLSTNNW MS        ++FGEGWHNNHHAFEYSAR G+EWW+ D GWYVI+FLQAIGVAT+VK+PS+THKKKLA +  K
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMDEKK

A0A6J1GWJ3 palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like4.8e-3074.42Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMD
        GKRPWKTNDLS NNW       WV L+ FGEGWHNNHHAFEYSAR G+EWW+ D GWYVI FLQAIGVAT+VK+PSQTH +KLA D
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAMD

SwissProt top hitse value%identityAlignment
P0DOW2 Acyl-CoA C20 Delta5-desaturase6.3e-2758.33Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLA
        G RPW T DLSTNNW       ++ +++ GEGWHNNHHAFEYSARHG+EWW+ID  WY+I  L+ +G+AT++KVPS+ HK+K++
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLA

P0DOW3 Acyl-CoA 5-desaturase AL211.2e-2558.33Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLA
        G + W T DLSTNNW       ++ +++ GEGWHNNHHAFEYSARHG+EWW+ID  WYVI  L+ +G+AT+VKVPS+ HK+K++
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLA

Q949X0 Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic7.4e-2861.9Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLA
        GK+ W T DLS NNW       WV  ++FGEGWHNNHHAFE+SARHGLEWW++D  WYV+ FLQAIG+AT+VK+PS+  K+++A
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLA

Q9FV68 Icosanoyl-CoA 5-desaturase (Fragment)1.8e-2667.47Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKL
        G RPW T DLSTNN        +V L +FGEGWHNNHHAFE SARHGLEWWEID  WYVI  LQAIG+ATNVK+P++  K+KL
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKL

Q9LVZ3 Probable lipid desaturase ADS3.2, chloroplastic3.4e-2557.65Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM
        G R W T+D S NNW       WV +++ GEGWHNNHHAFE+SARHGLEWW++D  W +I FL+AIG+ATNVK+P++T  K  A+
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM

Arabidopsis top hitse value%identityAlignment
AT1G06080.1 delta 9 desaturase 13.2e-2656.47Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM
        G R WKTND S N W       W+ + SFGE WHNNHHAFE SAR GLEWW+ID  WY++ FL+ IG+AT+VK+PS++ ++++AM
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM

AT1G06100.1 Fatty acid desaturase family protein1.8e-2454.12Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM
        G + W+TND S N W       W+ L++ GE WHNNHHAFE SARHGLEW+++D  WY+I F QA+G+ATNVK+P+   K+K+A+
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM

AT2G31360.1 16:0delta9 desaturase 24.6e-2554.12Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM
        G R WKTND S N W       W+ + SFGE WHNNHHAFE SAR GLEWW+ID  WY++ F + IG+AT+VKVP++  ++++A+
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM

AT3G15850.1 fatty acid desaturase 55.3e-2961.9Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLA
        GK+ W T DLS NNW       WV  ++FGEGWHNNHHAFE+SARHGLEWW++D  WYV+ FLQAIG+AT+VK+PS+  K+++A
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLA

AT3G15870.1 Fatty acid desaturase family protein2.5e-2657.65Show/hide
Query:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM
        G R W T+D S NNW       WV +++ GEGWHNNHHAFE+SARHGLEWW++D  W +I FL+AIG+ATNVK+P++T  K  A+
Subjt:  GKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHKKKLAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATCAAATTCTTTGTCTTGCAGGCTGTAAGGTTCGTAGTACTCTTGCACATAACATTTTTGGTGAATTCCGTATGTCATATATGGGAAAACGACCTTGGAAAAC
AAACGATTTGTCAACAAACAATTGGAATATGTCTAAACCCATTAAGTGGGTGGGTTTAGTTTCATTTGGAGAAGGTTGGCACAATAATCACCATGCCTTTGAATATTCAG
CTAGACATGGGCTTGAATGGTGGGAAATTGACTTTGGTTGGTATGTTATTATATTTCTTCAAGCCATTGGAGTAGCCACTAACGTCAAAGTACCTTCTCAAACCCACAAG
AAGAAGTTGGCGATGGATGAAAAAAAAAATCATATGAAAGCCTTCCAAAGTGATATCCTTTTACATAGGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATCAAATTCTTTGTCTTGCAGGCTGTAAGGTTCGTAGTACTCTTGCACATAACATTTTTGGTGAATTCCGTATGTCATATATGGGAAAACGACCTTGGAAAAC
AAACGATTTGTCAACAAACAATTGGAATATGTCTAAACCCATTAAGTGGGTGGGTTTAGTTTCATTTGGAGAAGGTTGGCACAATAATCACCATGCCTTTGAATATTCAG
CTAGACATGGGCTTGAATGGTGGGAAATTGACTTTGGTTGGTATGTTATTATATTTCTTCAAGCCATTGGAGTAGCCACTAACGTCAAAGTACCTTCTCAAACCCACAAG
AAGAAGTTGGCGATGGATGAAAAAAAAAATCATATGAAAGCCTTCCAAAGTGATATCCTTTTACATAGGGATTAA
Protein sequenceShow/hide protein sequence
MRNQILCLAGCKVRSTLAHNIFGEFRMSYMGKRPWKTNDLSTNNWNMSKPIKWVGLVSFGEGWHNNHHAFEYSARHGLEWWEIDFGWYVIIFLQAIGVATNVKVPSQTHK
KKLAMDEKKNHMKAFQSDILLHRD