; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G12460 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G12460
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRan BP2/NZF zinc finger-like superfamily protein isoform 2
Genome locationClcChr07:27252716..27254324
RNA-Seq ExpressionClc07G12460
SyntenyClc07G12460
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044427.1 putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa]2.5e-4768Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK-----------------------FPP
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGGG GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK                        P 
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK-----------------------FPP

Query:  VLLPPLGNPVIGFVPGRDAMNITLQAGWNVSDAVLQETRTNKTSQAKIIL
            P       +  GR AMNITLQAGW+  DAVL+ET TNKTSQAKI+L
Subjt:  VLLPPLGNPVIGFVPGRDAMNITLQAGWNVSDAVLQETRTNKTSQAKIIL

XP_008454250.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]7.6e-3697.3Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGGG GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK

XP_022948549.1 periodic tryptophan protein 2 isoform X2 [Cucurbita moschata]5.8e-3676.47Show/hide
Query:  LSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG----------GGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSC
        L++R  F+   S  + E MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG          GGGRGGSGFGYGGSDVRPGDWYCS+GNCGAHNFASRSSC
Subjt:  LSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG----------GGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSC

Query:  FK
        FK
Subjt:  FK

XP_022998917.1 periodic tryptophan protein 2 isoform X2 [Cucurbita maxima]5.8e-3675.49Show/hide
Query:  LSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG----------GGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSC
        L++R  ++   S  ++E MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG          GGGRGGSGFGYGGSDVRPGDWYCS+GNCGAHNFASRSSC
Subjt:  LSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG----------GGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSC

Query:  FK
        FK
Subjt:  FK

XP_038892097.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]2.6e-3698.65Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK

TrEMBL top hitse value%identityAlignment
A0A0A0KTI0 Uncharacterized protein4.8e-3697.3Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGGG GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK

A0A1S3BZE4 uncharacterized RNA-binding protein C17H9.04c-like3.7e-3697.3Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGGG GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK

A0A5A7TRE1 Putative RNA-binding protein C17H9.04c-like1.2e-4768Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK-----------------------FPP
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGGG GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK                        P 
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK-----------------------FPP

Query:  VLLPPLGNPVIGFVPGRDAMNITLQAGWNVSDAVLQETRTNKTSQAKIIL
            P       +  GR AMNITLQAGW+  DAVL+ET TNKTSQAKI+L
Subjt:  VLLPPLGNPVIGFVPGRDAMNITLQAGWNVSDAVLQETRTNKTSQAKIIL

A0A6J1GA82 periodic tryptophan protein 2 isoform X22.8e-3676.47Show/hide
Query:  LSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG----------GGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSC
        L++R  F+   S  + E MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG          GGGRGGSGFGYGGSDVRPGDWYCS+GNCGAHNFASRSSC
Subjt:  LSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG----------GGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSC

Query:  FK
        FK
Subjt:  FK

A0A6J1K9C2 periodic tryptophan protein 2 isoform X22.8e-3675.49Show/hide
Query:  LSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG----------GGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSC
        L++R  ++   S  ++E MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG          GGGRGGSGFGYGGSDVRPGDWYCS+GNCGAHNFASRSSC
Subjt:  LSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG----------GGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSC

Query:  FK
        FK
Subjt:  FK

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c1.6e-0429.77Show/hide
Query:  ENMSRPGDWNCRSCQHLNFQRRDMCQRCGDP------------------KSGGGGGRGGSGF--GYGGS-------------------------------
        +N  RPGDWNC  C   NFQRR  C RC  P                    G   G G S F   YGGS                               
Subjt:  ENMSRPGDWNCRSCQHLNFQRRDMCQRCGDP------------------KSGGGGGRGGSGF--GYGGS-------------------------------

Query:  ----DVRPGDWYCSVGNCGAHNFASRSSCFK
              R GDW C    CG HNFA    C +
Subjt:  ----DVRPGDWYCSVGNCGAHNFASRSSCFK

P32770 Asparagine-rich protein1.2e-0452.63Show/hide
Query:  LNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDP
        L+   + +N  RPGDWNC SC   NFQRR  C RC  P
Subjt:  LNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDP

Q27294 RNA-binding protein cabeza1.6e-0447.06Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDPK-----SGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHN
        R GDW C SC + NF  R+ C RC  PK     S GGGG GG G G GG     G+   S G  G HN
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDPK-----SGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHN

Arabidopsis top hitse value%identityAlignment
AT1G50300.1 TBP-associated factor 158.2e-0434.83Show/hide
Query:  GDWNC--RSCQHLNFQRRDMCQRCGDPK--------SGGGGGRGGSGFGYGGSDVR-----------PGDWYCSVGNCGAHNFASRSSC
        GDW C   SC ++NF  R +C RCG  +         G G GRG  G   GG+  +           P DW C +  CG  N+A R  C
Subjt:  GDWNC--RSCQHLNFQRRDMCQRCGDPK--------SGGGGGRGGSGFGYGGSDVR-----------PGDWYCSVGNCGAHNFASRSSC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein5.5e-1651.43Show/hide
Query:  GDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK
        GDW C +CQH NF++R+ CQ+CG PK    GG   S + Y  ++V  GDWYC   NCG+HN+ASR+SC++
Subjt:  GDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFK

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein4.3e-2971.76Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG----------GGRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFK
        MSRPGDWNCRSC HLNFQRRD CQRCGD +SG G          GGR  S FG+  GSDVRPGDWYC+VGNCG HNFASRS+CFK
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG----------GGRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFK

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein4.9e-2563.1Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG---------GGGRGGSGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFK
        M+RPGDWNCR C HLNFQRRD CQRC +P+ GG         GG    S FG+  G DVRPGDWYC++G+CG HNFA+RSSCFK
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGG---------GGGRGGSGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCACAATCAACTTTTTGAGTGGGATTTGAGTGTATATAAACGCCCCTTCCTTTCTTTACCTATTCCATCTTGCCATTCTTCTTTCTTTCTTTCTTTAAGAACCCA
ATTTCTTTCTCTTAACTCTTTAAGAGAGAAAGAGAATATGAGTAGACCGGGAGATTGGAACTGTAGGTCATGCCAGCACCTAAACTTCCAGAGGAGGGACATGTGCCAAC
GGTGCGGGGATCCAAAGAGCGGTGGTGGTGGCGGAAGAGGCGGTTCTGGATTCGGGTACGGAGGATCGGATGTGAGGCCCGGGGACTGGTATTGTAGCGTGGGGAATTGT
GGAGCTCACAATTTTGCAAGTCGATCAAGCTGCTTCAAATTCCCGCCCGTACTGCTGCCTCCGCTTGGAAATCCGGTGATTGGATTTGTGCCAGGTCGGGATGCAATGAA
CATAACTTTGCAAGCAGGATGGAATGTTTCAGATGCAGTGCTCCAAGAGACTCGTACTAACAAAACTAGCCAAGCCAAAATAATCCTCTCCTTCATCATCAAGTTTTGGT
ATGCTTCCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCACAATCAACTTTTTGAGTGGGATTTGAGTGTATATAAACGCCCCTTCCTTTCTTTACCTATTCCATCTTGCCATTCTTCTTTCTTTCTTTCTTTAAGAACCCA
ATTTCTTTCTCTTAACTCTTTAAGAGAGAAAGAGAATATGAGTAGACCGGGAGATTGGAACTGTAGGTCATGCCAGCACCTAAACTTCCAGAGGAGGGACATGTGCCAAC
GGTGCGGGGATCCAAAGAGCGGTGGTGGTGGCGGAAGAGGCGGTTCTGGATTCGGGTACGGAGGATCGGATGTGAGGCCCGGGGACTGGTATTGTAGCGTGGGGAATTGT
GGAGCTCACAATTTTGCAAGTCGATCAAGCTGCTTCAAATTCCCGCCCGTACTGCTGCCTCCGCTTGGAAATCCGGTGATTGGATTTGTGCCAGGTCGGGATGCAATGAA
CATAACTTTGCAAGCAGGATGGAATGTTTCAGATGCAGTGCTCCAAGAGACTCGTACTAACAAAACTAGCCAAGCCAAAATAATCCTCTCCTTCATCATCAAGTTTTGGT
ATGCTTCCAATTGA
Protein sequenceShow/hide protein sequence
MFHNQLFEWDLSVYKRPFLSLPIPSCHSSFFLSLRTQFLSLNSLREKENMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGRGGSGFGYGGSDVRPGDWYCSVGNC
GAHNFASRSSCFKFPPVLLPPLGNPVIGFVPGRDAMNITLQAGWNVSDAVLQETRTNKTSQAKIILSFIIKFWYASN