; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G13100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G13100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMediator of RNA polymerase II transcription subunit 6
Genome locationClcChr07:27918505..27921665
RNA-Seq ExpressionClc07G13100
SyntenyClc07G13100
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR007018 - Mediator complex, subunit Med6
IPR038566 - Mediator complex, subunit Med6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149176.2 mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus]1.2e-11165.55Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPG GNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV R                AL+Y S                                
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI

Query:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC
                  A T  S KL                         G VDSENESE VKPAKETINFKEVKRVDHILASLQRK                   
Subjt:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC

Query:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
             LPPAPPPPPFPEGYAPA TAETEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

XP_008447572.1 PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo]3.6e-11165.36Show/hide
Query:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDR
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R                AL+Y S                               
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDR

Query:  IWYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS
                   A T  S KL                         G VDSENESE VKPAKETINFKEVKRVDHILASLQRK                  
Subjt:  IWYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS

Query:  CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
              LPPAPPPPPFPEGYAPAPTA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

XP_022148297.1 mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]4.9e-10863.87Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPP APPGI NFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R                AL+Y S                                
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI

Query:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC
                  A T  S KL                         G VDSENESE VKP KETINFKEVKRVDHILASLQRK                   
Subjt:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC

Query:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
             LPPAPPPPPFPEGY PAPTAE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Subjt:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

XP_023524903.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo]1.6e-10362.46Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGIGNFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R                AL+Y S                                
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI

Query:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC
                  A T  S KL                         G VDSENESE VKPAK TI+FKEVKRVD ILASLQRK                   
Subjt:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC

Query:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
             LPPAPPPPPFPEGY PAP +E EKGPE+Q GE QQP ADPIIDQGPAKRMKF
Subjt:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

XP_038896808.1 mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]3.5e-11466.39Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPGIGNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R                AL+Y S                                
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI

Query:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC
                  A T  S KL                         G VDSENE E VKPAKETINFKEVKRVDHILASLQRK                   
Subjt:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC

Query:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
             LPPAPPPPPFPEGYAPAPTAETEKGPEN LGESQQPPADPIIDQGPAKRMKF
Subjt:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

TrEMBL top hitse value%identityAlignment
A0A0A0L8C2 Mediator of RNA polymerase II transcription subunit 66.0e-11265.55Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPG GNFE GPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV R                AL+Y S                                
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI

Query:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC
                  A T  S KL                         G VDSENESE VKPAKETINFKEVKRVDHILASLQRK                   
Subjt:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC

Query:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
             LPPAPPPPPFPEGYAPA TAETEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

A0A1S3BHR9 Mediator of RNA polymerase II transcription subunit 61.8e-11165.36Show/hide
Query:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDR
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R                AL+Y S                               
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDR

Query:  IWYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS
                   A T  S KL                         G VDSENESE VKPAKETINFKEVKRVDHILASLQRK                  
Subjt:  IWYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS

Query:  CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
              LPPAPPPPPFPEGYAPAPTA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

A0A5D3CDR8 Mediator of RNA polymerase II transcription subunit 61.8e-11165.36Show/hide
Query:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFE GP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDR
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R                AL+Y S                               
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDR

Query:  IWYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS
                   A T  S KL                         G VDSENESE VKPAKETINFKEVKRVDHILASLQRK                  
Subjt:  IWYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMS

Query:  CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
              LPPAPPPPPFPEGYAPAPTA+TEKGPENQ GESQQP ADPIIDQGPAKRMKF
Subjt:  CIKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

A0A6J1D4P7 Mediator of RNA polymerase II transcription subunit 62.4e-10863.87Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPP APPGI NFE GP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R                AL+Y S                                
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI

Query:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC
                  A T  S KL                         G VDSENESE VKP KETINFKEVKRVDHILASLQRK                   
Subjt:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC

Query:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
             LPPAPPPPPFPEGY PAPTAE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Subjt:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

A0A6J1G911 Mediator of RNA polymerase II transcription subunit 61.8e-10362.46Show/hide
Query:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGIGNFE GP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDW CNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R                AL+Y S                                
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRI

Query:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC
                  A T  S KL                         G VDSENESE VKPAKETI+FKEVKRVD ILASLQRK                   
Subjt:  WYLAIGDIFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSC

Query:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
             LPPAPPPPPFPEGY PAP +E EKGPE+Q GE QQP ADPIIDQGPAKRMKF
Subjt:  IKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

SwissProt top hitse value%identityAlignment
F4IXJ7 Mediator of RNA polymerase II transcription subunit 69.7e-7550.57Show/hide
Query:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR
        TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  CNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFR
Subjt:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGD
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV R         +++ +S A             A S +    + L  C   +    +  L++  
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGD

Query:  IFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLP
          Y L IF    + E     +YG        N FL     +++NE    KPA ET++ KE+KRVD IL SL RK                        L 
Subjt:  IFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLP

Query:  PAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  PAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

O75586 Mediator of RNA polymerase II transcription subunit 67.5e-1942.5Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVVRLI
         IYQAP L +V  +RV+  +
Subjt:  SIYQAPQLCNVFAARVVRLI

Q54PN3 Putative mediator of RNA polymerase II transcription subunit 65.0e-2346.61Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI
        D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G+EY L + +EP  F+  KQ R  P  V     YY+++G+I
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI

Query:  YQAPQLCNVFAARVVRLI
        YQAP+L  VF +RV + I
Subjt:  YQAPQLCNVFAARVVRLI

Q5RD94 Mediator of RNA polymerase II transcription subunit 67.5e-1942.5Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVVRLI
         IYQAP L +V  +RV+  +
Subjt:  SIYQAPQLCNVFAARVVRLI

Q921D4 Mediator of RNA polymerase II transcription subunit 67.5e-1942.5Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD  CNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVVRLI
         IYQAP L +V  +RV+  +
Subjt:  SIYQAPQLCNVFAARVVRLI

Arabidopsis top hitse value%identityAlignment
AT3G21350.1 RNA polymerase transcriptional regulation mediator-related2.3e-7148.01Show/hide
Query:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR
        TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  CNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFR
Subjt:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGD
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV R                                                          I +
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGD

Query:  IFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGV--KPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIV
        I  A T  + KL +                         VD+EN++E    KPA ET++ KE+KRVD IL SL RK                        
Subjt:  IFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGV--KPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIV

Query:  LPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        L P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  LPPAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF

AT3G21350.2 RNA polymerase transcriptional regulation mediator-related6.9e-7650.57Show/hide
Query:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR
        TA    GN  D  +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD  CNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFR
Subjt:  TAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGD
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV R         +++ +S A             A S +    + L  C   +    +  L++  
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGD

Query:  IFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLP
          Y L IF    + E     +YG        N FL     +++NE    KPA ET++ KE+KRVD IL SL RK                        L 
Subjt:  IFYALTIFSYKLHSEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLP

Query:  PAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF
        P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  PAPPPPPFPEGYAPAPTAETEKGPENQLGESQQPPADPIIDQGPAKRMKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCACCACCCCCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGATGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTT
TAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGGCTTGTAACAACGAACAACTCAGAA
TGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAG
AGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTGTGAGATT
AATTTGTTTTAAAATGTATGTCTATTCTGTATTCGGCCTCTCTCTTGCTCTGTTTTATTGTAGTCTTACGTTGAGTTTCCATCATACTGCAGAGTCGGGCATTATATTAC
ATATCAAAGGCCTTTACCACTGCTTCTTCAAAGTTGGAGAAGATAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTTAGTTATAAACTTCAT
TCTGAAATCAAATTTTGGGTCTTATATGGAATACTTTGCAACTTCAATTTTATTAACTATTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGGAGTAAA
ACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGC
TAGTTTATCAAATGTCTTGTATTAAGAAGATAGTGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGC
CCTGAAAATCAGCTAGGAGAATCACAACAGCCTCCAGCTGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA
mRNA sequenceShow/hide mRNA sequence
TTCACTCAGAGCGGTGGGATCTGTAAAATTCGACACTTTGTGGCCGGAAAACTGAAATCTCACGCAAATGGCAACTCCACCACCCCCGACGGCCCCGCCAGGGATCGGGA
ATTTTGAGGATGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTCTGGCTCAATACTTACCCTCTTGATCGAAAC
TTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGGCTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAAT
GACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTACTATA
TCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTGTGAGATTAATTTGTTTTAAAATGTATGTCTATTCTGTATTCGGCCTCTCT
CTTGCTCTGTTTTATTGTAGTCTTACGTTGAGTTTCCATCATACTGCAGAGTCGGGCATTATATTACATATCAAAGGCCTTTACCACTGCTTCTTCAAAGTTGGAGAAGA
TAGGATATGGTATCTAGCTATTGGTGATATATTTTATGCACTTACTATTTTTAGTTATAAACTTCATTCTGAAATCAAATTTTGGGTCTTATATGGAATACTTTGCAACT
TCAATTTTATTAACTATTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGGAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTT
GATCATATTCTTGCATCCTTACAGCGCAAGAAGATGATATTGTGTTTGTGTATATGCTGCAAAGAGCTAGTTTATCAAATGTCTTGTATTAAGAAGATAGTGCTGCCACC
TGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAGCTAGGAGAATCACAACAGCCTCCAGCTGATC
CCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGAAGAGTTTATGCTACCTTGCCCATCTGACTTGAGAAACCTATTTAAACCTGCAATTGAAATTCAACACGG
ATGACATGCCTGCACAAAGCATGGTGAGTTGTCAAACACCCCCCACCAAAAAGAAAAGGAAGTAGAATAGCCTTTGTGAAAAGCCTGTAATTATAGACTTAGCTGGTCAC
AAATGGATTCATTATTCATTGTTTTAGCTGTAACTTGTACTACACTACCATGTAACCATGACTTCTTGATTTTGTAAGTTAAAACTGTTTGATACACATACCACCAGGTT
CTTTTATCTTGGGAAATAGTTTTTTAATATTGAACATGGT
Protein sequenceShow/hide protein sequence
MATPPPPTAPPGIGNFEDGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWACNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQK
RDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRLICFKMYVYSVFGLSLALFYCSLTLSFHHTAESGIILHIKGLYHCFFKVGEDRIWYLAIGDIFYALTIFSYKLH
SEIKFWVLYGILCNFNFINYFLISGSVDSENESEGVKPAKETINFKEVKRVDHILASLQRKKMILCLCICCKELVYQMSCIKKIVLPPAPPPPPFPEGYAPAPTAETEKG
PENQLGESQQPPADPIIDQGPAKRMKF