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Clc07G13610 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G13610
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionIntegrase
Genome locationClcChr07:28429663..28440322
RNA-Seq ExpressionClc07G13610
SyntenyClc07G13610
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581832.1 hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2185.48Show/hide
Query:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG
        LS  HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQQND ESLRKLESEGIFFPFG
Subjt:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG

KAG7018271.1 hypothetical protein SDJN02_20139, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-2185.48Show/hide
Query:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG
        LS  HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQQND ESLRKLESEGIFFPFG
Subjt:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG

XP_004141160.2 uncharacterized protein LOC101210601 [Cucumis sativus]2.0e-2554.96Show/hide
Query:  HTAANPPEIFFLFPSLPCGS---------------HTNLTFCRT--------------LSPTSLPRPSLLSKAHQNNRIWSNQALSHGHGVEVTPMLFPS
        HTAANP  IFFL P  P  +               H +L F R                + +SL     LS AHQNNRIW +QALSHGHGVEVTPMLFPS
Subjt:  HTAANPPEIFFLFPSLPCGS---------------HTNLTFCRT--------------LSPTSLPRPSLLSKAHQNNRIWSNQALSHGHGVEVTPMLFPS

Query:  VSKHQTARHLQQNDNESLRKLESEGIFFPFG
        VSKHQTA  LQQND ESLR+L+SEGIFFPFG
Subjt:  VSKHQTARHLQQNDNESLRKLESEGIFFPFG

XP_022955351.1 uncharacterized protein LOC111457406 isoform X1 [Cucurbita moschata]2.2e-2185.48Show/hide
Query:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG
        LS  HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQQND ESLRKLESEGIFFPFG
Subjt:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG

XP_022955352.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata]2.2e-2185.48Show/hide
Query:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG
        LS  HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQQND ESLRKLESEGIFFPFG
Subjt:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG

TrEMBL top hitse value%identityAlignment
A0A0A0LIB6 Uncharacterized protein9.5e-2654.96Show/hide
Query:  HTAANPPEIFFLFPSLPCGS---------------HTNLTFCRT--------------LSPTSLPRPSLLSKAHQNNRIWSNQALSHGHGVEVTPMLFPS
        HTAANP  IFFL P  P  +               H +L F R                + +SL     LS AHQNNRIW +QALSHGHGVEVTPMLFPS
Subjt:  HTAANPPEIFFLFPSLPCGS---------------HTNLTFCRT--------------LSPTSLPRPSLLSKAHQNNRIWSNQALSHGHGVEVTPMLFPS

Query:  VSKHQTARHLQQNDNESLRKLESEGIFFPFG
        VSKHQTA  LQQND ESLR+L+SEGIFFPFG
Subjt:  VSKHQTARHLQQNDNESLRKLESEGIFFPFG

A0A1S3BHV7 uncharacterized protein LOC1034900281.4e-2185.48Show/hide
Query:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG
        LS AHQNNRIW +QALSHGHGVEVTPMLFPSVSKHQ A  LQQND ESLR+L+SEGIFFPFG
Subjt:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG

A0A5A7U9V1 Putative structural constituent of ribosome1.4e-2185.48Show/hide
Query:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG
        LS AHQNNRIW +QALSHGHGVEVTPMLFPSVSKHQ A  LQQND ESLR+L+SEGIFFPFG
Subjt:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG

A0A6J1GTJ1 uncharacterized protein LOC111457406 isoform X11.1e-2185.48Show/hide
Query:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG
        LS  HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQQND ESLRKLESEGIFFPFG
Subjt:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X21.1e-2185.48Show/hide
Query:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG
        LS  HQNN IWS+Q+LS GHGV+VTPMLFPSVSKHQTA HLQQND ESLRKLESEGIFFPFG
Subjt:  LSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAGAAAAAAGATGTTGATGTCGACTTGCTTGCATGGTGGTTGGTTGAGCTGACACAGTGGTATCGATGGAGCTTGCATGGTGGTCGACAGAGTTGGCAT
GAAGAAGCGGTTCTCATGGGAGATGTGGTGGTAATGGCTGACGAGGAGTGCTCAAGAGGATGTGTAGAGCTTGCATGGTATCTTGATAATGATTGTAGTAACCAC
ATGACAGGAAATGCAAATATATTTGTTACTTTGGATGAACCTCTCCAAAGTGAAGTGAAAAAACAGCCGCACACCGCCGCTAACCCACCGGAAATTTTCTTTCTT
TTCCCATCGCTCCCCTGCGGCAGCCACACCAACCTTACATTTTGCCGCACACTGTCACCAACCTCACTGCCACGCCCATCTTTGCTTTCTAAGGCGCATCAGAAT
AACAGGATTTGGAGTAACCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTTTTTCCTTCAGTCTCTAAGCACCAGACTGCTCGTCATTTGCAG
CAGAATGACAACGAATCGTTGAGGAAGCTCGAATCGGAGGGCATTTTCTTTCCTTTTGGCTTCCGTCGCTCCGGTTCTTCTTGCCGATGTCACTCAAGCTTCAGA
GATGACTGCTCTATTAGTCTTGAGAACCTTGTCGGCAGTGAAGATACTTGCCTGCCAGCGTCTACCCTTCACTGTAATAATGCTGAGGGTGTCTATCTACTTATT
CTGTTATTCATGGAAGAATCGATAATCTTGATAGGCTCTCGAGGAAGACGCCTATGGTGGATGCTTGCCCTACATAGAGTCTTTAGCGATATGATTGAGGAGTTC
CTCCTCCATCTCCGTTTCAGTAGAAGGGGAGATTTTTATGGCAAGCCAAGGGGAAAGCGACGTTGTGAGTTTCATGAAGAGAGGGTGAAGAGATTGGATAGGGAC
AACCATGAAGGAACCATCGAAGGAGATCACTACTGGCGACAAGTGTGGGCGAAAAAGGAATCATGGATTTTTTGCCCGCAAAGCAACCAAGGGTGGACGGAAAGT
TATTGCTCGAAGGATTGCAAAGGGTCGATCAAGAATAACTGCATAATGTTCATCTCAAGTCAGTTTACTTTCGGTTCATGGTGGCTGCTGATGCTGCACAGAGCA
AATAAACATAACTTAAGCGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAGAAAAAAGATGTTGATGTCGACTTGCTTGCATGGTGGTTGGTTGAGCTGACACAGTGGTATCGATGGAGCTTGCATGGTGGTCGACAGAGTTGGCAT
GAAGAAGCGGTTCTCATGGGAGATGTGGTGGTAATGGCTGACGAGGAGTGCTCAAGAGGATGTGTAGAGCTTGCATGGTATCTTGATAATGATTGTAGTAACCAC
ATGACAGGAAATGCAAATATATTTGTTACTTTGGATGAACCTCTCCAAAGTGAAGTGAAAAAACAGCCGCACACCGCCGCTAACCCACCGGAAATTTTCTTTCTT
TTCCCATCGCTCCCCTGCGGCAGCCACACCAACCTTACATTTTGCCGCACACTGTCACCAACCTCACTGCCACGCCCATCTTTGCTTTCTAAGGCGCATCAGAAT
AACAGGATTTGGAGTAACCAAGCTCTGTCCCATGGCCATGGCGTTGAAGTCACTCCGATGCTTTTTCCTTCAGTCTCTAAGCACCAGACTGCTCGTCATTTGCAG
CAGAATGACAACGAATCGTTGAGGAAGCTCGAATCGGAGGGCATTTTCTTTCCTTTTGGCTTCCGTCGCTCCGGTTCTTCTTGCCGATGTCACTCAAGCTTCAGA
GATGACTGCTCTATTAGTCTTGAGAACCTTGTCGGCAGTGAAGATACTTGCCTGCCAGCGTCTACCCTTCACTGTAATAATGCTGAGGGTGTCTATCTACTTATT
CTGTTATTCATGGAAGAATCGATAATCTTGATAGGCTCTCGAGGAAGACGCCTATGGTGGATGCTTGCCCTACATAGAGTCTTTAGCGATATGATTGAGGAGTTC
CTCCTCCATCTCCGTTTCAGTAGAAGGGGAGATTTTTATGGCAAGCCAAGGGGAAAGCGACGTTGTGAGTTTCATGAAGAGAGGGTGAAGAGATTGGATAGGGAC
AACCATGAAGGAACCATCGAAGGAGATCACTACTGGCGACAAGTGTGGGCGAAAAAGGAATCATGGATTTTTTGCCCGCAAAGCAACCAAGGGTGGACGGAAAGT
TATTGCTCGAAGGATTGCAAAGGGTCGATCAAGAATAACTGCATAATGTTCATCTCAAGTCAGTTTACTTTCGGTTCATGGTGGCTGCTGATGCTGCACAGAGCA
AATAAACATAACTTAAGCGTGTGA
Protein sequenceShow/hide protein sequence
MKKKKDVDVDLLAWWLVELTQWYRWSLHGGRQSWHEEAVLMGDVVVMADEECSRGCVELAWYLDNDCSNHMTGNANIFVTLDEPLQSEVKKQPHTAANPPEIFFL
FPSLPCGSHTNLTFCRTLSPTSLPRPSLLSKAHQNNRIWSNQALSHGHGVEVTPMLFPSVSKHQTARHLQQNDNESLRKLESEGIFFPFGFRRSGSSCRCHSSFR
DDCSISLENLVGSEDTCLPASTLHCNNAEGVYLLILLFMEESIILIGSRGRRLWWMLALHRVFSDMIEEFLLHLRFSRRGDFYGKPRGKRRCEFHEERVKRLDRD
NHEGTIEGDHYWRQVWAKKESWIFCPQSNQGWTESYCSKDCKGSIKNNCIMFISSQFTFGSWWLLMLHRANKHNLSV