; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc07G13690 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G13690
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S3
Genome locationClcChr07:28513448..28514801
RNA-Seq ExpressionClc07G13690
SyntenyClc07G13690
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005777 - peroxisome (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR009019 - K homology domain superfamily, prokaryotic type
IPR015946 - K homology domain-like, alpha/beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4087203.1 unnamed protein product [Lactuca saligna]2.1e-2069.14Show/hide
Query:  GFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        GF  +  +   + +  H   + M +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  GFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

EXB38920.1 40S ribosomal protein S3-3 [Morus notabilis]1.6e-2088.71Show/hide
Query:  ASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        A+IM +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  ASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

KAB1214744.1 Filament-like plant protein 7 [Morella rubra]2.7e-2070.73Show/hide
Query:  PRDFETKSKRGAVVHNRASI---MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        P++   K ++ AV     S+   M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  PRDFETKSKRGAVVHNRASI---MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

KAF3508316.1 hypothetical protein F2Q69_00001453 [Brassica cretica]2.5e-2164.71Show/hide
Query:  ARKLAPSLRLSLAFVGSCFQRGFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQN
        ++ L  +L LS  FV    +R   R F T S++ A   N    M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQN
Subjt:  ARKLAPSLRLSLAFVGSCFQRGFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQN

Query:  VL
        VL
Subjt:  VL

XP_006854617.1 40S ribosomal protein S3-3 [Amborella trichopoda]3.6e-2093.22Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        MV+QISKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

TrEMBL top hitse value%identityAlignment
A0A6A1VPG4 Filament-like plant protein 71.3e-2070.73Show/hide
Query:  PRDFETKSKRGAVVHNRASI---MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        P++   K ++ AV     S+   M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  PRDFETKSKRGAVVHNRASI---MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

A0A6S7MH16 30S ribosomal protein S3, chloroplastic1.0e-2069.14Show/hide
Query:  GFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        GF  +  +   + +  H   + M +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  GFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

A0A803NY91 Uncharacterized protein2.7e-2171.43Show/hide
Query:  GFPRDFETKSKR---GAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        GF R  + KS R    A   + +++M +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  GFPRDFETKSKR---GAVVHNRASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

W1PMI4 KH type-2 domain-containing protein1.7e-2093.22Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        MV+QISKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

W9QJX2 40S ribosomal protein S3-37.8e-2188.71Show/hide
Query:  ASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        A+IM +Q+SKKRKFVADGVFFAE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  ASIMVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

SwissProt top hitse value%identityAlignment
P02350 40S ribosomal protein S3-A5.4e-1983.05Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        M  QISKKRKFVADG+F AE+NE LTRELAEDGYSGVEVRVTP RT+III A+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

P79891 40S ribosomal protein S35.4e-1983.05Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        M  QISKKRKFVADG+F AE+NE LTRELAEDGYSGVEVRVTP RT+III A+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

Q9FJA6 40S ribosomal protein S3-33.0e-2289.83Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

Q9M339 40S ribosomal protein S3-23.0e-2289.83Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

Q9SIP7 40S ribosomal protein S3-13.0e-2289.83Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

Arabidopsis top hitse value%identityAlignment
AT2G31610.1 Ribosomal protein S3 family protein2.2e-2389.83Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

AT3G53870.1 Ribosomal protein S3 family protein2.2e-2389.83Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL

AT5G35530.1 Ribosomal protein S3 family protein2.2e-2389.83Show/hide
Query:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL
        M +QISKKRKFVADGVF+AE+NEVLTRELAEDGYSGVEVRVTPMRT+IIIRA+RTQNVL
Subjt:  MVSQISKKRKFVADGVFFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTCTCTCAGACTCTCTATCCGTCTCGCTCTCTCTCCTCTCGCTCTCGCGCGCTCTCCCTTGCATCGCTCTCTCAGTCTCTCTCTCGCTCTCGTGCTCTC
TTTCAGTGTCGCTCTCGCTCTTGCCCTCTCTCAGCTCGCAAACTCGCTCCCTCTCTCAGACTCTCTCTTGCTTTCGTTGGGTCTTGCTTCCAGCGAGGGTTTCCG
AGAGATTTTGAGACCAAATCGAAGAGAGGAGCAGTAGTGCACAATAGGGCGTCAATCATGGTGTCCCAAATTAGCAAGAAACGAAAGTTTGTCGCTGATGGAGTT
TTCTTCGCTGAGATCAACGAGGTGCTGACCAGAGAGCTCGCTGAGGATGGTTACTCCGGCGTCGAGGTCAGGGTTACGCCGATGCGTACTCAGATTATAATCAGG
GCATCACGAACACAAAATGTTCTAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTCTCTCAGACTCTCTATCCGTCTCGCTCTCTCTCCTCTCGCTCTCGCGCGCTCTCCCTTGCATCGCTCTCTCAGTCTCTCTCTCGCTCTCGTGCTCTC
TTTCAGTGTCGCTCTCGCTCTTGCCCTCTCTCAGCTCGCAAACTCGCTCCCTCTCTCAGACTCTCTCTTGCTTTCGTTGGGTCTTGCTTCCAGCGAGGGTTTCCG
AGAGATTTTGAGACCAAATCGAAGAGAGGAGCAGTAGTGCACAATAGGGCGTCAATCATGGTGTCCCAAATTAGCAAGAAACGAAAGTTTGTCGCTGATGGAGTT
TTCTTCGCTGAGATCAACGAGGTGCTGACCAGAGAGCTCGCTGAGGATGGTTACTCCGGCGTCGAGGTCAGGGTTACGCCGATGCGTACTCAGATTATAATCAGG
GCATCACGAACACAAAATGTTCTAGCTTAG
Protein sequenceShow/hide protein sequence
MSLSQTLYPSRSLSSRSRALSLASLSQSLSRSRALFQCRSRSCPLSARKLAPSLRLSLAFVGSCFQRGFPRDFETKSKRGAVVHNRASIMVSQISKKRKFVADGV
FFAEINEVLTRELAEDGYSGVEVRVTPMRTQIIIRASRTQNVLA