CuGenDBv2

Gene ID	Clc07G13700
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Ubiquitin-like protein ATG12
Genome location	ClcChr07:28519334..28522144
RNA-Seq Expression	Clc07G13700
Synteny	Clc07G13700
Gene Ontology terms	GO:0000045 - autophagosome assembly (biological process) GO:0000422 - autophagy of mitochondrion (biological process) GO:0006501 - C-terminal protein lipidation (biological process) GO:0044804 - autophagy of nucleus (biological process) GO:0034045 - phagophore assembly site membrane (cellular component) GO:0034274 - Atg12-Atg5-Atg16 complex (cellular component)
InterPro domains	IPR007242 - Ubiquitin-like protein Atg12 IPR029071 - Ubiquitin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004151012.1 ubiquitin-like protein ATG12 [Cucumis sativus]

1.3e-44

98.95

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_008464001.1 PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]

3.0e-44

97.89

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022153405.1 ubiquitin-like protein ATG12 [Momordica charantia]

2.8e-42

95.79

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSSS RKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022955552.1 ubiquitin-like protein ATG12 [Cucurbita moschata]

2.1e-42

94.74

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_038878493.1 ubiquitin-like protein ATG12 [Benincasa hispida]

4.6e-45

100

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIA6 Ubiquitin-like protein ATG12

6.4e-45

98.95

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A1S3CKI1 Ubiquitin-like protein ATG12

1.4e-44

97.89

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1DGR5 Ubiquitin-like protein ATG12

1.3e-42

95.79

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSSS RKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1GTZ1 Ubiquitin-like protein ATG12

1.0e-42

94.74

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSSSA+KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1J054 Ubiquitin-like protein ATG12

5.1e-42

92.63

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESS+S++KVVVLLR+ GDAPILKQ KFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

SwissProt top hits

e value

%identity

Alignment

A2YAG8 Ubiquitin-like protein ATG12

4.3e-30

66.29

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Query:  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        ++  +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q1SF86 Ubiquitin-like protein ATG12

2.8e-37

77.89

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Query:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MA+ ES +S RKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VNSAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q69NP0 Ubiquitin-like protein ATG12

4.3e-30

66.29

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Query:  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        ++  +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  SSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q8S924 Ubiquitin-like protein ATG12A

2.4e-36

78.95

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Query:  STESS--SSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  SS RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESS--SSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q9LVK3 Ubiquitin-like protein ATG12B

2.2e-34

73.12

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Query:  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TES +S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Arabidopsis top hits

e value

%identity

Alignment

AT1G54210.1 Ubiquitin-like superfamily protein

1.7e-37

78.95

Show/hide

Query:  STESS--SSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  SS RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESS--SSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT1G54210.2 Ubiquitin-like superfamily protein

3.9e-10

45.26

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Query:  STESS--SSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  SS RKVVV LRATG APILKQ+KFK                                            NFG DGKLVVNYACSMAWG
Subjt:  STESS--SSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT3G13970.1 Ubiquitin-like superfamily protein

1.6e-35

73.12

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Query:  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TES +S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Sequences

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CDS sequence

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ATGGCTTCTACAGAGTCGTCTAGTTCTGCTCGAAAAGTGGTTGTCCTGCTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAACCAAGTTTAAGATGCCCGGA
ACAGACAAATTTATTAAAGTTATTGATTATATACGCCGGTCAATTCAACGGGACACCTTGTTTGTGTTTGTCAACAGTGCATTCTCACCAGGTCCAGATGAGACA
GTTATTGATCTATATAATAACTTTGGAATTGACGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA

mRNA sequence

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CGGGCTTTTAATTGCCTTACAAAGCCCAAACTTAGGCCATGAACGTACAAAATTGCCCAAACAAAGATCTTTGGATCCAAGTCGGAGACAGTACCCCACACGGAG
GGGTGGCGATTCTGCAGTCCACGGCGGAGGAAAACGATGGCTTCTACAGAGTCGTCTAGTTCTGCTCGAAAAGTGGTTGTCCTGCTGAGAGCTACTGGGGATGCT
CCCATTCTCAAACAAACCAAGTTTAAGATGCCCGGAACAGACAAATTTATTAAAGTTATTGATTATATACGCCGGTCAATTCAACGGGACACCTTGTTTGTGTTT
GTCAACAGTGCATTCTCACCAGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGACGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCT
TGGGGCTAATTGGCAGCATGGTAAATGCTTAGTGCTAAGGCTGTAAATAGTATATTGTACAATTCATTCTAAGTACTGTGATTTTAAACTCATCCATTACGAACT
ATAGTGTTAGATTTTCCTCCATATTATAGGCTGCTTTCCCCGATGAAAAACAAATCAGCCAAGTTCTAGAGTCATACTTGTCAAGGTCTAGAGTTCTGTAATTAA
TTAATTAATTAATTAATTATTTGATAGACCTGTTTAATTAATCGTTTTGACGTTGAATATGAAAGCCAAAGGATATATTGTTCCGAATAGTGATATGGAAGCTAC
TCAGTTCCATATTTTTCTTTTTACAACATAACAGTTATTGAGACCGATACACGTTCTCACAACACAAGTACCATATTTTGTCTGATGCTAGATCAGTTCTTGTGC
GTCAGTTTAAGATGACATTACTTCGTGTTTAACCTTCATAACTACTCTGGTAGTTCGAGTTTATCATGCTTGC

Protein sequence

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MASTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Clc07G13700 (gene) of Watermelon (cordophanus) v2 genome