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Clc07G14040 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G14040
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING/U-box protein with C6HC-type zinc finger
Genome locationClcChr07:28726713..28727165
RNA-Seq ExpressionClc07G14040
SyntenyClc07G14040
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0000151 - ubiquitin ligase complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0031624 - ubiquitin conjugating enzyme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR002867 - IBR domain
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR017907 - Zinc finger, RING-type, conserved site
IPR031127 - E3 ubiquitin ligase RBR family
IPR044066 - TRIAD supradomain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581788.1 putative E3 ubiquitin-protein ligase ARI5, partial [Cucurbita argyrosperma subsp. sororia]7.9e-5263.06Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESV
        D KSASEMFT+  CSHTFC DCIS+HIAAKLE++MA KCP        EPEMC   VPKE+LERWGDAL +AM+LKWK + CPFKD  A M+DE D E+V
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESV

Query:  ECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
        ECP CWRMFCA+C VGWHG+M C EF++L K   G VDR++ M MKLAD+++ +  P
Subjt:  ECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

XP_004144476.2 probable E3 ubiquitin-protein ligase RNF144A [Cucumis sativus]2.2e-5768.12Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--
        DAKS S+MFTNR+C+HTFCT CIS HIAAKLE  MA KCP        EPEMCG  VPK +LERW DALFEAMILKWKRL CPFKD  A +IDEG EE  
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--

Query:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
         +VEC SCWR+FCA+C+VGWHGEMECGEF++LRKEAG S D+DD M +KLA+ K+    P
Subjt:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

XP_008460341.1 PREDICTED: E3 ubiquitin-protein ligase RNF144B-like [Cucumis melo]2.5e-5869.38Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--
        DAKS S+MFTNR+C+HTFCTDCIS+HIAAKLE TMA KCP        EPEMCG  VPK +LERW DALFEAMILK KRL CPFKD  A MIDEGDEE  
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--

Query:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
         +VEC SCWR+FCA+C+VGWHGEM+CGEF++LRKEAG S D+DD M +KLA+ K+    P
Subjt:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

XP_022956145.1 probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata]7.9e-5263.06Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESV
        D KSASEMFT+  CSHTFC DCIS+HIAAKLE++MA KCP        EPEMC   VPKE+LERWGDAL +AM+LKWK + CPFKD  A M+DE D E+V
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESV

Query:  ECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
        ECP CWRMFCA+C VGWHG+M C EF++L K   G VDR++ M MKLAD+++ +  P
Subjt:  ECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

XP_038889081.1 probable E3 ubiquitin-protein ligase RNF144A-A [Benincasa hispida]2.0e-5567.5Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--
        DAK ASEMFTN +CSHTFCTDCIS++IAAKLE++MA KCP        EPEMC   +PKE+LERWGDALFEAMILKWKRL CPFKD  APMI EGDE+  
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--

Query:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
         +VEC +CWR+FCAQCKVGWHG+MEC EFEK+RKE     + +D+M MKLAD+K+ ++ P
Subjt:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

TrEMBL top hitse value%identityAlignment
A0A0A0L952 Uncharacterized protein1.0e-5768.12Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--
        DAKS S+MFTNR+C+HTFCT CIS HIAAKLE  MA KCP        EPEMCG  VPK +LERW DALFEAMILKWKRL CPFKD  A +IDEG EE  
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--

Query:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
         +VEC SCWR+FCA+C+VGWHGEMECGEF++LRKEAG S D+DD M +KLA+ K+    P
Subjt:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

A0A1S3CDI0 E3 ubiquitin-protein ligase RNF144B-like1.2e-5869.38Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--
        DAKS S+MFTNR+C+HTFCTDCIS+HIAAKLE TMA KCP        EPEMCG  VPK +LERW DALFEAMILK KRL CPFKD  A MIDEGDEE  
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--

Query:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
         +VEC SCWR+FCA+C+VGWHGEM+CGEF++LRKEAG S D+DD M +KLA+ K+    P
Subjt:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

A0A5A7UED3 E3 ubiquitin-protein ligase RNF144B-like protein1.2e-5869.38Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--
        DAKS S+MFTNR+C+HTFCTDCIS+HIAAKLE TMA KCP        EPEMCG  VPK +LERW DALFEAMILK KRL CPFKD  A MIDEGDEE  
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEE--

Query:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
         +VEC SCWR+FCA+C+VGWHGEM+CGEF++LRKEAG S D+DD M +KLA+ K+    P
Subjt:  -SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

A0A6J1GX07 probable E3 ubiquitin-protein ligase ARI103.8e-5263.06Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESV
        D KSASEMFT+  CSHTFC DCIS+HIAAKLE++MA KCP        EPEMC   VPKE+LERWGDAL +AM+LKWK + CPFKD  A M+DE D E+V
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESV

Query:  ECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
        ECP CWRMFCA+C VGWHG+M C EF++L K   G VDR++ M MKLAD+++ +  P
Subjt:  ECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

A0A6J1IU95 probable E3 ubiquitin-protein ligase ARI51.6e-5061.15Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPE--------PEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESV
        D KSASEMFT+  CSHTFC DCIS+HIAAKL +++A KCPE        PEMC   VPKE+LERWGDAL +AM+LKWK + CPFKD  A M+DE D E+V
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPE--------PEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESV

Query:  ECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
        ECP CWRMFCA+C VGWH +M C EF++L K   G VDR++ M MKLAD+++ +  P
Subjt:  ECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

SwissProt top hitse value%identityAlignment
A5PK27 E3 ubiquitin-protein ligase RNF144B1.1e-0628.46Show/hide
Query:  KSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEM------------CGGLVPKELLERWGDALFEAMI-LKWKRLKCPFKDWW----APMID
        +S  +M T + C   FCT C+ +++   + E   +    P+M               LVP +  + +    FE  + L   R  CP  D          D
Subjt:  KSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEM------------CGGLVPKELLERWGDALFEAMI-LKWKRLKCPFKDWW----APMID

Query:  EGDEESVECPSCWRMFCAQCKVGWHGEMEC
         G    VECPSC   FC+ CK  WH E+ C
Subjt:  EGDEESVECPSCWRMFCAQCKVGWHGEMEC

Q7Z419 E3 ubiquitin-protein ligase RNF144B3.6e-0727.21Show/hide
Query:  KSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEM------------CGGLVPKELLERWGDALFEAMI-LKWKRLKCPFKDWW----APMID
        +S  +M T + C   FCT C+ +++   + E   +    P+M               LVP +  + +    FE  + L   R  CP  D          D
Subjt:  KSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEM------------CGGLVPKELLERWGDALFEAMI-LKWKRLKCPFKDWW----APMID

Query:  EGDEESVECPSCWRMFCAQCKVGWHGEMECGEFEKL
         G    VECPSC   FC+ CK  WH E+ C + + +
Subjt:  EGDEESVECPSCWRMFCAQCKVGWHGEMECGEFEKL

Q8BKD6 E3 ubiquitin-protein ligase RNF144B3.1e-0625.85Show/hide
Query:  KSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEM------------CGGLVPKELLERWGDALFEAMI-LKWKRLKCPFKDWWA----PMID
        +S  +M   + C   FCT C+ +++   + E   +    P+M               LVP +  + +    FE  + +   R  CP  D          D
Subjt:  KSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEM------------CGGLVPKELLERWGDALFEAMI-LKWKRLKCPFKDWWA----PMID

Query:  EGDEESVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRD
         G    VECPSC   FC+ CK  WH E  C + +    E G     D
Subjt:  EGDEESVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRD

Arabidopsis top hitse value%identityAlignment
AT3G14250.1 RING/U-box superfamily protein4.5e-2938.41Show/hide
Query:  MDAKSASEMFTNRI-CSHTFCTDCISRHIAAKLEETMA-AKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMI--DEG
        MD K +S++F     C+H +CTDC  R++A K++E  +  KCP        EP  C  L+PK++ +RW   L E++I  W +  CPFKD  A M+  + G
Subjt:  MDAKSASEMFTNRI-CSHTFCTDCISRHIAAKLEETMA-AKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMI--DEG

Query:  DEE--SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
        D      EC SC R+FC QCKV WH  + C EF++       S D DD + +++A  KQ    P
Subjt:  DEE--SVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

AT3G45510.1 RING/U-box protein5.4e-1428.47Show/hide
Query:  MDAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEP--------EMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPM----IDEG
        +D     EMF+  +CSH FC +C+ + I   L E    +CP            C  L+  +  E W   + E  I    R  CP    WA M    + E 
Subjt:  MDAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEP--------EMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPM----IDEG

Query:  DEESVE--CPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSV
         ++ V   C  C + FC  C V WH  + C E++    +A  +V
Subjt:  DEESVE--CPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSV

AT3G45540.1 RING/U-box protein with C6HC-type zinc finger4.1e-1430.15Show/hide
Query:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEM--------CGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMID-------
        D  + ++MF    C H FC+DC+ RHI  +L E    +CP            C  L+  ++ E W   + E +I    R+ CP     A M +       
Subjt:  DAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEM--------CGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMID-------

Query:  EGDEESVECPSCWRMFCAQCKVGWHGEMECGEFEKL
        + DE    C  C ++FC +CKV WH  + C +++KL
Subjt:  EGDEESVECPSCWRMFCAQCKVGWHGEMECGEFEKL

AT3G53690.1 RING/U-box superfamily protein1.8e-3040.12Show/hide
Query:  MDAKSASEMFTNRICSHTFCTDCISRHIAAKLEET-MAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDE-
        +D+KS  E F    CSH +C DC+S++IAAKL++  ++ +CP        EP+ C  ++PKE+ +RWGDAL EA++++ K+  CP+KD  A +  E  E 
Subjt:  MDAKSASEMFTNRICSHTFCTDCISRHIAAKLEET-MAAKCP--------EPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDE-

Query:  --ESVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP
          +  ECP C RM C +C   WH EM C EF+KL     G   RDD++   +A +K+ +  P
Subjt:  --ESVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP

AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein1.5e-1631.71Show/hide
Query:  ASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEP--------EMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESVE---
        A  MF+   C H FC  C+ +H+  KL   MA KCP          + CG L+  +L + W   L E  I   +R+ CP+    A M      ES +   
Subjt:  ASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEP--------EMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESVE---

Query:  ----------CPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEE
                  C  C  +FC  CKV WHG + C E++KL  E       DDV    LA+ K   +
Subjt:  ----------CPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCGAAATCCGCCTCCGAAATGTTCACAAACAGAATTTGTTCCCATACCTTCTGCACCGATTGCATCTCAAGGCACATCGCCGCAAAGCTTGAGGAGACAATGGC
GGCGAAGTGCCCGGAGCCGGAAATGTGCGGAGGTTTGGTTCCGAAAGAGTTGTTGGAGCGTTGGGGGGATGCTCTGTTTGAAGCGATGATTCTGAAGTGGAAGAGATTGA
AGTGTCCTTTCAAAGACTGGTGGGCGCCGATGATCGATGAGGGGGATGAGGAGTCGGTGGAGTGTCCGAGTTGTTGGAGAATGTTCTGTGCTCAGTGTAAAGTGGGATGG
CATGGGGAAATGGAATGCGGAGAATTTGAGAAACTGCGGAAGGAGGCAGGAGGAAGTGTAGACAGAGACGACGTGATGAGGATGAAACTGGCGGATAAAAAGCAAATGGA
AGAGATGCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCGAAATCCGCCTCCGAAATGTTCACAAACAGAATTTGTTCCCATACCTTCTGCACCGATTGCATCTCAAGGCACATCGCCGCAAAGCTTGAGGAGACAATGGC
GGCGAAGTGCCCGGAGCCGGAAATGTGCGGAGGTTTGGTTCCGAAAGAGTTGTTGGAGCGTTGGGGGGATGCTCTGTTTGAAGCGATGATTCTGAAGTGGAAGAGATTGA
AGTGTCCTTTCAAAGACTGGTGGGCGCCGATGATCGATGAGGGGGATGAGGAGTCGGTGGAGTGTCCGAGTTGTTGGAGAATGTTCTGTGCTCAGTGTAAAGTGGGATGG
CATGGGGAAATGGAATGCGGAGAATTTGAGAAACTGCGGAAGGAGGCAGGAGGAAGTGTAGACAGAGACGACGTGATGAGGATGAAACTGGCGGATAAAAAGCAAATGGA
AGAGATGCCCTAA
Protein sequenceShow/hide protein sequence
MDAKSASEMFTNRICSHTFCTDCISRHIAAKLEETMAAKCPEPEMCGGLVPKELLERWGDALFEAMILKWKRLKCPFKDWWAPMIDEGDEESVECPSCWRMFCAQCKVGW
HGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP