| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_022955856.1 sm-like protein LSM1B [Cucurbita moschata] | 1.5e-38 | 70.8 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
+G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V ENQYCD P+GLLVVR +N + IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDLLE
KRTLKKWME+LL+
Subjt: KRTLKKWMEDLLE
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| XP_022980750.1 sm-like protein LSM1B [Cucurbita maxima] | 1.1e-38 | 64.84 | Show/hide |
Query: MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLP
M+ P + + IF +G YLDRKLL+L LD RC IGT C+FD YG++V+ESAFER ENQYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLP
Subjt: MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLP
Query: QILTARKAERESLVLKRTLKKWMEDLLE
QIL ARKAE +S V KRTLKKWME+L +
Subjt: QILTARKAERESLVLKRTLKKWMEDLLE
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| XP_023527036.1 sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo] | 4.9e-26 | 73.81 | Show/hide |
Query: GSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLE
G+ V+ESAFER V ENQYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES LKRTLKKWME+LL+
Subjt: GSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLE
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| XP_023527037.1 sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo] | 3.0e-39 | 66.41 | Show/hide |
Query: MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLP
M+ P + + IF +G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V ENQYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLP
Subjt: MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLP
Query: QILTARKAERESLVLKRTLKKWMEDLLE
QIL ARKAE ES LKRTLKKWME+LL+
Subjt: QILTARKAERESLVLKRTLKKWMEDLLE
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| XP_038894529.1 sm-like protein LSM1B [Benincasa hispida] | 3.2e-33 | 84.44 | Show/hide |
Query: SFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLEE
SFD +G+IVLESAFER +VEN+YCDNPIGLLVVRAENIILIGE D SLPQLPPHMT VSLPQILTARKAERES+ L+RTLKKWME+LLE+
Subjt: SFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLEE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A022Q0J9 U6 snRNA-associated Sm-like protein LSm1 | 1.3e-24 | 55.65 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
L YLD+KLLVL D R +G SFD + + VLE A ER +V YCD P+GL V+R EN++LIGELDL +LPPHMT VS +I A+KAERE+ L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDLLEED
K T+KKWM D L+ D
Subjt: KRTLKKWMEDLLEED
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| A0A2H5NE06 U6 snRNA-associated Sm-like protein LSm1 | 2.2e-24 | 54.95 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
L YLD+KLLVL D R +GT CSFD + + VLE A ER +V + YCD P+GL V+R EN++LIGELDL +LPPH+T VS+ +I A+KAERE+ L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDL
K +++K ME L
Subjt: KRTLKKWMEDL
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| A0A6J1GV01 sm-like protein LSM1B | 7.1e-39 | 70.8 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
+G YLDRKLL+L LD RC IGT C+FD +G+ V+ESAFER V ENQYCD P+GLLVVR +N + IGE+DLS P+LPPH+T+VSLPQIL ARKAE ES L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDLLE
KRTLKKWME+LL+
Subjt: KRTLKKWMEDLLE
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| A0A6J1IXE4 sm-like protein LSM1B | 5.4e-39 | 64.84 | Show/hide |
Query: MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLP
M+ P + + IF +G YLDRKLL+L LD RC IGT C+FD YG++V+ESAFER ENQYCD P+GLLVVR +N I IGE+DLS P+LPPH+T+VSLP
Subjt: MVSPILSQGIF---YLGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLP
Query: QILTARKAERESLVLKRTLKKWMEDLLE
QIL ARKAE +S V KRTLKKWME+L +
Subjt: QILTARKAERESLVLKRTLKKWMEDLLE
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| V4SS25 U6 snRNA-associated Sm-like protein LSm1 | 2.2e-24 | 54.95 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
L YLD+KLLVL D R +GT CSFD + + VLE A ER +V + YCD P+GL V+R EN++LIGELDL +LPPH+T VS+ +I A+KAERE+ L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDL
K +++K ME L
Subjt: KRTLKKWMEDL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O15116 U6 snRNA-associated Sm-like protein LSm1 | 1.8e-10 | 37.62 | Show/hide |
Query: LDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTL
+D+K LVL D R IG S D + ++VL ER V +Y D P G+ VVR EN++L+GE+DL P + VS+ +IL ++ E+++ + L
Subjt: LDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTL
Query: K
K
Subjt: K
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| Q54W83 Probable U6 snRNA-associated Sm-like protein LSm1 | 1.8e-10 | 33.02 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
LGD +D+KL+V+ D R FIG +FD + +IVL+ ER V + Y D +GL +R +N++++GE+D + +S +I A E+
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKK
+ LK+
Subjt: KRTLKK
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| Q5E9Z8 U6 snRNA-associated Sm-like protein LSm1 | 1.8e-10 | 37.62 | Show/hide |
Query: LDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTL
+D+K LVL D R IG S D + ++VL ER V +Y D P G+ VVR EN++L+GE+DL P + VS+ +IL ++ E+++ + L
Subjt: LDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTL
Query: K
K
Subjt: K
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| Q8LFL8 Sm-like protein LSM1B | 5.6e-25 | 54.05 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
L YLDRKLLVL D R +GT SFD + + VLE A ER +V QYCD P+GL V+R EN++LIGELD +LPPHM VS +I A+K ERE+ L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDL
+ T++K ME L
Subjt: KRTLKKWMEDL
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| Q945P8 Sm-like protein LSM1A | 1.4e-23 | 49.55 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
L YLD+KLLVL D R +G SFD + + VLE A+ER +V + YCD P+GL ++R EN++LIGELD+ +LP HM V +I A+KAE+E ++L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDL
K T++K ME L
Subjt: KRTLKKWMEDL
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G19120.1 Small nuclear ribonucleoprotein family protein | 9.8e-25 | 49.55 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
L YLD+KLLVL D R +G SFD + + VLE A+ER +V + YCD P+GL ++R EN++LIGELD+ +LP HM V +I A+KAE+E ++L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDL
K T++K ME L
Subjt: KRTLKKWMEDL
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| AT3G14080.1 Small nuclear ribonucleoprotein family protein | 4.0e-26 | 54.05 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
L YLDRKLLVL D R +GT SFD + + VLE A ER +V QYCD P+GL V+R EN++LIGELD +LPPHM VS +I A+K ERE+ L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDL
+ T++K ME L
Subjt: KRTLKKWMEDL
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| AT3G14080.2 Small nuclear ribonucleoprotein family protein | 4.0e-26 | 54.05 | Show/hide |
Query: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
L YLDRKLLVL D R +GT SFD + + VLE A ER +V QYCD P+GL V+R EN++LIGELD +LPPHM VS +I A+K ERE+ L
Subjt: LGDYLDRKLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVL
Query: KRTLKKWMEDL
+ T++K ME L
Subjt: KRTLKKWMEDL
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