CuGenDBv2

Gene ID	Clc07G16690
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Genome location	ClcChr07:31229596..31233768
RNA-Seq Expression	Clc07G16690
Synteny	Clc07G16690
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044650.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

4.6e-141

72.32

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN
        M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA                       ENL  + N +               
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN

Query:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY
                 +RKS    SVQVAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  +DG      SA+VTKTK+DY
Subjt:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY

Query:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF
        KEPWDY NSYYPTTLP+RMPYSGDPE+LDE EFGQDAM+REYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSN   S 
Subjt:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF

Query:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDLGDIGKRVVVTPDISS+LNSVT L
Subjt:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

TYK16939.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

4.6e-133

69.71

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN
        M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA                       ENL  + N                 
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN

Query:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY
              K+EK+     +SVQVAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  +DG      SA+VTKTK+DY
Subjt:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY

Query:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF
        KEPWDY NSYYPTTLP+RMPYSGD E+LDE EFGQDAM+REYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSN   S 
Subjt:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF

Query:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDLGDIGKRVV     S     V+EL
Subjt:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

XP_004146914.1 DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus]

3.9e-140

71.8

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN
        M+N DPSPPRRKVKFAPKS+ RKR  PPPVQKTEDEDG+GYVAQTRYLLRRA                       ENL  + N                 
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN

Query:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY
              K+EK+     +SVQVAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+  +V EDGK FDK  +DG      SA+ TKTK+DY
Subjt:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY

Query:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF
        KEPWDY NSYYPTTLP+RMPYSGDPE+LDE EFGQD M+REYDENSVIPALDLGLLDENTE+TKYFFQLPARLPLPKQSSTATGKEK GNSRSSN   S 
Subjt:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF

Query:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGSNCSFLQHVVAIN E+GQCCDLGDIG RVVVTPDISS+LNSVT L
Subjt:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

XP_008453902.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo]

3.9e-140

72.06

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN
        M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA                       ENL  + N                 
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN

Query:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY
              K+EK+     +SVQVAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  +DG      SA+VTKTK+DY
Subjt:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY

Query:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF
        KEPWDY NSYYPTTLP+RMPYSGD E+LDE EFGQDAM+REYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSN   S 
Subjt:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF

Query:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDLGDIGKRVVVTPDISS+LNSVT L
Subjt:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

XP_038879339.1 DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]

4.3e-147

74.87

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVK
        M+NPD SPPRRKVKFAPKSAPR+RPPPVQK EDEDGDGYVAQTRYLLRRA                       ENL  + N +                 
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVK

Query:  DGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDYKE
               +RKS    SVQVAFGPGAA TSSSIRTYGVPKVENSSRKNDIEP+VDED+EFILPLPM+VEE+GKIFDK  +DG      SAIVTKTKKDYKE
Subjt:  DGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDYKE

Query:  PWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSFEL
        PWDYHNS YPTTLPIRMPYSGDPEQLDE EFGQDA DREYDE+SVIPALDLGLLDE TENTKYFFQLPARLPLPKQSSTATGKEK GN RSS  MGS EL
Subjt:  PWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSFEL

Query:  DDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTELG
         DLKKLSAGCMGKLLIYKSGA+KLRLGDTLYDVSSGS+CSFLQHVVAIN ++GQCCDLGDIGKRV+VTPDISS+LNS+T LG
Subjt:  DDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTELG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ61 Uncharacterized protein

1.9e-140

71.8

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN
        M+N DPSPPRRKVKFAPKS+ RKR  PPPVQKTEDEDG+GYVAQTRYLLRRA                       ENL  + N                 
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN

Query:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY
              K+EK+     +SVQVAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+  +V EDGK FDK  +DG      SA+ TKTK+DY
Subjt:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY

Query:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF
        KEPWDY NSYYPTTLP+RMPYSGDPE+LDE EFGQD M+REYDENSVIPALDLGLLDENTE+TKYFFQLPARLPLPKQSSTATGKEK GNSRSSN   S 
Subjt:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF

Query:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGSNCSFLQHVVAIN E+GQCCDLGDIG RVVVTPDISS+LNSVT L
Subjt:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

A0A1S3BYJ9 DNA-directed RNA polymerase III subunit rpc4-like

1.9e-140

72.06

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN
        M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA                       ENL  + N                 
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN

Query:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY
              K+EK+     +SVQVAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  +DG      SA+VTKTK+DY
Subjt:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY

Query:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF
        KEPWDY NSYYPTTLP+RMPYSGD E+LDE EFGQDAM+REYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSN   S 
Subjt:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF

Query:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDLGDIGKRVVVTPDISS+LNSVT L
Subjt:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like

2.2e-141

72.32

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN
        M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA                       ENL  + N +               
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN

Query:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY
                 +RKS    SVQVAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  +DG      SA+VTKTK+DY
Subjt:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY

Query:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF
        KEPWDY NSYYPTTLP+RMPYSGDPE+LDE EFGQDAM+REYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSN   S 
Subjt:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF

Query:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDLGDIGKRVVVTPDISS+LNSVT L
Subjt:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

A0A5D3D2X2 Ribosomal protein L15

2.2e-133

69.71

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN
        M+N D SPPRRKVKFAPKS+ R+R  PPPVQKTEDEDG+GYVAQTRYLLRRA                       ENL  + N                 
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKR--PPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKN

Query:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY
              K+EK+     +SVQVAFGPGA  TSSSIRTYGVPKVEN SRKNDIEPEVDED+EF+LP+ M+V EDGK FDK  +DG      SA+VTKTK+DY
Subjt:  VKDGLYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDG------SAIVTKTKKDY

Query:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF
        KEPWDY NSYYPTTLP+RMPYSGD E+LDE EFGQDAM+REYDENSVIPALDLGL DENTENTKYFFQLPARLPLPKQSSTATGKEK GNSRSSN   S 
Subjt:  KEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSF

Query:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        +LDDLKKLSAGCMGKLLIYKSGA+KLRLGD LYDVSSGS+CSFLQHVVAIN EKGQCCDLGDIGKRVV     S     V+EL
Subjt:  ELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

A0A6J1J8D2 DNA-directed RNA polymerase III subunit rpc4-like

5.5e-124

66.4

Show/hide

Query:  MRNPDPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVK
        M+NPDPSPPRRK+KFAPKS PR+RPPP  KTEDED DG VAQTRYLLRRA                       ENL  + N                   
Subjt:  MRNPDPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVK

Query:  DGLYKLEKRKSQAFTSVQVAFGPGAAPT--SSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDGSAIVTKTKKDYKEPWDY
            K+EK+     +SVQVAFGPGAA    SSSIRTYGVPK+ NSSRKNDIEPE  ED+E ILPLP++ EE GK  ++  ED     TK  KDYKEPW+ 
Subjt:  DGLYKLEKRKSQAFTSVQVAFGPGAAPT--SSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDGSAIVTKTKKDYKEPWDY

Query:  HNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSFELDDLK
        HNSYYPTTLP+RMP+SGDPE LDE EFGQD MDREYDENS IPALDLGLLDEN+ENT+YFFQLPARLP PK+SST+TGKEK GN RSS   GS EL DL+
Subjt:  HNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSFELDDLK

Query:  KLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTELG
         L  G MGKLLIYKSGAVKLRLGDTLYDVSSG +CSFLQHVVAIN +KGQC DLGDIGKRVVVTPDI S+LNS T+LG
Subjt:  KLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTELG

SwissProt top hits

e value

%identity

Alignment

P05423 DNA-directed RNA polymerase III subunit RPC4

1.4e-07

41.56

Show/hide

Query:  LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLGDIGKRVVVTPDISSILN
        L  L+ G +GKLLI KSG V+L LG    DV+ G+ CSFLQ +V++   +   G+   LG +  ++V +PD  S+L+
Subjt:  LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLGDIGKRVVVTPDISSILN

P25441 DNA-directed RNA polymerase III subunit RPC4

1.7e-05

29.31

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Query:  FQLPARLPLPKQSSTATGKEKAGNSRS--SNRMGSFELDDLK-----KLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAIN--PEKGQC
        FQLP RLP  ++ +    KE      S  S +  + +  D K     +  AG +G + ++KSG + +++G+ + D+  G+  +FLQ V+A++   +    
Subjt:  FQLPARLPLPKQSSTATGKEKAGNSRS--SNRMGSFELDDLK-----KLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAIN--PEKGQC

Query:  CDLGDIGKRVVVTPDI
          LG +  ++VVTP I
Subjt:  CDLGDIGKRVVVTPDI

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

4.1e-07

41.56

Show/hide

Query:  LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLGDIGKRVVVTPDISSILN
        L  L+ G +GKLLI KSG V+L LG    DV+ G+ CSFLQ +V++   +   G    LG I  ++V +P+  S+L+
Subjt:  LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLGDIGKRVVVTPDISSILN

Q8T1V7 DNA-directed RNA polymerase III subunit rpc4

1.5e-04

36.36

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Query:  LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKG-----QCCDLGDIGKRVVVTPDISSI
        +K++ +G +G L IYKSG   L++G   YD+SSG    FL+ V     + G      C  LG   + +V  P IS I
Subjt:  LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKG-----QCCDLGDIGKRVVVTPDISSI

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

8.2e-08

41.56

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Query:  LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLGDIGKRVVVTPDISSILN
        L  L+ G +GKLLI KSG V+L LG    DV+ G+ CSFLQ +V++   +   G+   LG +  ++V +PD  S+L+
Subjt:  LKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAI---NPEKGQCCDLGDIGKRVVVTPDISSILN

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

2.5e-44

39.13

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Query:  SENEATRSKKNVKDG-------LYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNV---EEDGKIFDKI
        S  EA   ++N+K         + +  K +++A +S +VAF P  +P   +IR++GVPK E+    +D+ P        ILP   +V   +ED       
Subjt:  SENEATRSKKNVKDG-------LYKLEKRKSQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNV---EEDGKIFDKI

Query:  GEDGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLD-ENTENTKYFFQLPARLPLPKQSSTATG
        GE+    VT+T  DY EPWDY NSYYPT LP+R P SGD E LD+ EFG+ A +R+YDEN++  A +LGL   ++++   + F++P  LP+ KQ++ AT 
Subjt:  GEDGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSVIPALDLGLLD-ENTENTKYFFQLPARLPLPKQSSTATG

Query:  KEKAGNSRSSNRMGSFELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        K      RS     S   +  + L  G MGK+L+YKSGAVKL++GD L+DVS G        VVAI+ +   C  +G   K V VTPD+ S+LN  +++
Subjt:  KEKAGNSRSSNRMGSFELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

AT5G09380.1 RNA polymerase III RPC4

7.3e-36

39.83

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Query:  ENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDGSAIVTKTKK-DYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSV
        E S RK   + +V       L   +N     K  ++   +G+   T T++ +YKEPWDY+ SYYP TLP+R PY+GDPE LD  EF Q      + E+S+
Subjt:  ENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDGSAIVTKTKK-DYKEPWDYHNSYYPTTLPIRMPYSGDPEQLDEVEFGQDAMDREYDENSV

Query:  IPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSFELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHV
          A +LGL++++ E   +F +LP+   +P  S+     E   N +      +    DLK L  G MGKLL+YKSGAVK++LG+ LYDVS G    F Q V
Subjt:  IPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSFELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSGSNCSFLQHV

Query:  VAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL
        + +N E+  CC +GD+ K  V+TPDI SIL  +  +
Subjt:  VAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTEL

AT5G09380.1 RNA polymerase III RPC4

2.0e-01

44.44

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Query:  DPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRR
        +  PP RK+KFAPK+ P++ P P  K E  + +   AQ   LLRR
Subjt:  DPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRR

Sequences

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CDS sequence

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ATGAGGAATCCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCCCCGAAATCTGCACCCCGCAAAAGGCCACCCCCGGTTCAAAAAACTGAAGACGAAGATGGTGA
TGGTTATGTTGCTCAAACTCGGTACCTCTTACGCCGTGCCGCGCGTCATAGATTTATTTTCCTTGATCAAATACCATCTAATTCGCCTGTAAAATATGTCAACATGTTTG
AAAACTTAGCCTGTAAGTGTAACTCTATCCCCATGAGAATCTCGGAAAACGAGGCAACAAGGTCGAAAAAAAATGTAAAAGATGGACTGTATAAGCTTGAGAAAAGAAAA
TCCCAAGCTTTTACTTCAGTGCAAGTTGCATTCGGTCCTGGTGCGGCACCAACATCATCTTCTATTAGAACATATGGCGTTCCCAAAGTAGAAAACAGTAGCAGAAAAAA
TGACATTGAGCCTGAAGTTGATGAAGATGATGAGTTCATCTTGCCTCTGCCTATGAATGTTGAAGAAGATGGGAAAATTTTCGATAAAATAGGCGAAGATGGTTCGGCTA
TAGTAACCAAGACCAAGAAGGATTACAAAGAACCTTGGGATTACCATAATTCTTACTATCCTACTACACTTCCTATACGGATGCCTTACTCTGGAGACCCTGAACAACTT
GATGAAGTTGAGTTCGGGCAGGATGCGATGGATAGAGAGTACGACGAGAACTCTGTAATACCTGCATTGGATCTTGGATTGCTGGATGAAAATACAGAGAATACTAAGTA
CTTTTTTCAGCTTCCTGCTCGTCTTCCTTTACCCAAACAATCATCTACTGCTACAGGAAAGGAGAAAGCAGGAAATTCAAGATCTTCAAACAGAATGGGCTCATTCGAGC
TGGACGATTTGAAGAAATTGTCTGCTGGATGTATGGGGAAACTATTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTAGGAGATACTCTTTACGACGTTTCTTCTGGT
TCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACCCTGAAAAGGGACAGTGCTGCGATCTTGGAGACATCGGCAAACGAGTCGTCGTAACACCAGATATTAGTTC
CATCTTGAATTCAGTGACTGAGTTGGGATGA

mRNA sequence

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CTGGTCTAGGGTTCGATCCTTCCTTCTTCTCATTTTGCACCATTTTTCCGCCTTTCCCTTCGTCATCTTCAACCTCGAGGTCATGAGGAATCCCGATCCATCTCCTCCAC
GCAGAAAGGTCAAATTCGCCCCGAAATCTGCACCCCGCAAAAGGCCACCCCCGGTTCAAAAAACTGAAGACGAAGATGGTGATGGTTATGTTGCTCAAACTCGGTACCTC
TTACGCCGTGCCGCGCGTCATAGATTTATTTTCCTTGATCAAATACCATCTAATTCGCCTGTAAAATATGTCAACATGTTTGAAAACTTAGCCTGTAAGTGTAACTCTAT
CCCCATGAGAATCTCGGAAAACGAGGCAACAAGGTCGAAAAAAAATGTAAAAGATGGACTGTATAAGCTTGAGAAAAGAAAATCCCAAGCTTTTACTTCAGTGCAAGTTG
CATTCGGTCCTGGTGCGGCACCAACATCATCTTCTATTAGAACATATGGCGTTCCCAAAGTAGAAAACAGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGAT
GATGAGTTCATCTTGCCTCTGCCTATGAATGTTGAAGAAGATGGGAAAATTTTCGATAAAATAGGCGAAGATGGTTCGGCTATAGTAACCAAGACCAAGAAGGATTACAA
AGAACCTTGGGATTACCATAATTCTTACTATCCTACTACACTTCCTATACGGATGCCTTACTCTGGAGACCCTGAACAACTTGATGAAGTTGAGTTCGGGCAGGATGCGA
TGGATAGAGAGTACGACGAGAACTCTGTAATACCTGCATTGGATCTTGGATTGCTGGATGAAAATACAGAGAATACTAAGTACTTTTTTCAGCTTCCTGCTCGTCTTCCT
TTACCCAAACAATCATCTACTGCTACAGGAAAGGAGAAAGCAGGAAATTCAAGATCTTCAAACAGAATGGGCTCATTCGAGCTGGACGATTTGAAGAAATTGTCTGCTGG
ATGTATGGGGAAACTATTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTAGGAGATACTCTTTACGACGTTTCTTCTGGTTCAAACTGCAGTTTTCTTCAACATGTTG
TGGCAATCAACCCTGAAAAGGGACAGTGCTGCGATCTTGGAGACATCGGCAAACGAGTCGTCGTAACACCAGATATTAGTTCCATCTTGAATTCAGTGACTGAGTTGGGA
TGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCGTCTGGCTGTGTAGTGAAGATGCTCACTTAATTAGTATGGAAGTTGGGATGTCAAATTCTCGACTAAACTTTCTC
CTCTATTAATTCTATTGCAACAAGAACGTACTCATTCTCTTTGATTTCTAGCCGTGGAATAGGCAGGTACCCAACCATGTTGATTGTTGTAAATACCATTTTGGATATGA
TCTTTCTTGATTGTGGTAACTTATGTTCGGATTCACACCTATCTTGACCGTAATAGATATAAACAAAAATAGG

Protein sequence

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MRNPDPSPPRRKVKFAPKSAPRKRPPPVQKTEDEDGDGYVAQTRYLLRRAARHRFIFLDQIPSNSPVKYVNMFENLACKCNSIPMRISENEATRSKKNVKDGLYKLEKRK
SQAFTSVQVAFGPGAAPTSSSIRTYGVPKVENSSRKNDIEPEVDEDDEFILPLPMNVEEDGKIFDKIGEDGSAIVTKTKKDYKEPWDYHNSYYPTTLPIRMPYSGDPEQL
DEVEFGQDAMDREYDENSVIPALDLGLLDENTENTKYFFQLPARLPLPKQSSTATGKEKAGNSRSSNRMGSFELDDLKKLSAGCMGKLLIYKSGAVKLRLGDTLYDVSSG
SNCSFLQHVVAINPEKGQCCDLGDIGKRVVVTPDISSILNSVTELG

Clc07G16690 (gene) of Watermelon (cordophanus) v2 genome