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Clc07G17190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc07G17190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTetratricopeptide-like helical
Genome locationClcChr07:31651676..31652092
RNA-Seq ExpressionClc07G17190
SyntenyClc07G17190
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]3.3e-3670.87Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA
        MSVSLEALAMAGIDSNEW MDAQEWERN  EID VPPHLLADE+DD+       D E V S +SNY F + G FG   R+D + DG H ILGIF SLSK 
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA

Query:  IERKASNGMNSVRIMVRTILGFLMVMT
        IE++ASNGMNSVRI+VRTILGFLMVMT
Subjt:  IERKASNGMNSVRIMVRTILGFLMVMT

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4068.84Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA
        MSVSLEALAMAGI SNEWAMDA+EWERNE E D VPPHLLADEDDDDD         NV S VSNY FP+AGFF S  R+DG    +HC  GI CSLSK+
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA

Query:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL
        +E++ASNGM+SVRI+VRTILGFL+V  +KIISA TS +
Subjt:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-4169.57Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA
        MSVSLEALAMAGI SNEWAMDA+EWERNE E D VPPHLLADEDDDDD         NV S VSNY FP+AGFF S  R+DG  D +HC  GI CSLSK+
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA

Query:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL
        +E++ASNGM+SVRI+VRTILGFL+V  +KIISA TS +
Subjt:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]5.4e-3970.29Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA
        MSVSLEALAMAGIDSNEW MDAQEWERN  EID VPPHLLADE+DD+       D E V S +SNY F + G FG   R+D + DG   ILGIF SLSK 
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA

Query:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL
        IE++ASNGMNSVRI+VRTILGFLMVMT+KIISAQ SK+
Subjt:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.0e-2151.09Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA
        MSVSLEALAMAGIDSNEWAMDA+EWERNE E D +PPHLLADEDD++D+               + +FP      SC RKD    GV C   I   L K 
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA

Query:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSK
         E++  N ++S+ I+   ++GFLM MTIKII+++ SK
Subjt:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSK

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein2.4e-0868Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD
        M VSLEALAMAGIDSNEWAMDA+EW+ N  ++   D +PPHLLADED+++
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEI---DFVPPHLLADEDDDD

A0A0A0KWE7 Uncharacterized protein1.3e-3868.57Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDG--VHCILGIFCSLS
        MSVSLEALAMAGIDSNEWAMDA+EWERN  EID VPPHLLADE+DD+     D D+    S +SNY FP+ G F     +D + DG   H ILGIFCSLS
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDG--VHCILGIFCSLS

Query:  KAIERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL
        K IE++ASNGM+SVRI+VRTILGFLMVMT+KIISAQ SK+
Subjt:  KAIERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

A0A5A7TS68 Tetratricopeptide-like helical1.6e-3670.87Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA
        MSVSLEALAMAGIDSNEW MDAQEWERN  EID VPPHLLADE+DD+       D E V S +SNY F + G FG   R+D + DG H ILGIF SLSK 
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA

Query:  IERKASNGMNSVRIMVRTILGFLMVMT
        IE++ASNGMNSVRI+VRTILGFLMVMT
Subjt:  IERKASNGMNSVRIMVRTILGFLMVMT

A0A5D3CZU0 Tetratricopeptide-like helical2.6e-3970.29Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA
        MSVSLEALAMAGIDSNEW MDAQEWERN  EID VPPHLLADE+DD+       D E V S +SNY F + G FG   R+D + DG   ILGIF SLSK 
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA

Query:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL
        IE++ASNGMNSVRI+VRTILGFLMVMT+KIISAQ SK+
Subjt:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSKL

A0A6J1FX98 uncharacterized protein LOC1114478805.0e-2251.09Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA
        MSVSLEALAMAGIDSNEWAMDA+EWERNE E D +PPHLLADEDD++D+               + +FP      SC RKD    GV C   I   L K 
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKA

Query:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSK
         E++  N ++S+ I+   ++GFLM MTIKII+++ SK
Subjt:  IERKASNGMNSVRIMVRTILGFLMVMTIKIISAQTSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein6.5e-0646.43Show/hide
Query:  LEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADE--DDDDDDDGNDNDDEN
        +EALAMAG+D  EW +  +EWE  E+    VP HLLAD+  +++ ++D  DNDD++
Subjt:  LEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADE--DDDDDDDGNDNDDEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACC
GCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTT
TTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAAC
TCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAATGAAACCGAGATCGACTTCGTTCCACC
GCATTTATTAGCCGATGAAGATGACGATGACGATGACGATGGCAATGACAATGACGACGAGAATGTAATGAGTATCGTGAGTAACTATAGGTTTCCGATGGCCGGATTTT
TTGGGAGCTGTGGACGGAAAGATGGCAGAGGTGATGGTGTCCATTGCATTTTGGGGATTTTCTGTAGTTTAAGCAAAGCCATAGAGAGAAAGGCTTCTAATGGGATGAAC
TCAGTGAGAATAATGGTGAGAACTATTTTAGGGTTTTTGATGGTTATGACCATCAAGATAATTAGTGCACAAACATCCAAGTTGTAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDFVPPHLLADEDDDDDDDGNDNDDENVMSIVSNYRFPMAGFFGSCGRKDGRGDGVHCILGIFCSLSKAIERKASNGMN
SVRIMVRTILGFLMVMTIKIISAQTSKL