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Clc08G00030 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00030
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-binding storekeeper protein-related transcriptional regulator
Genome locationClcChr08:67453..68061
RNA-Seq ExpressionClc08G00030
SyntenyClc08G00030
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585873.1 putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia]2.7e-1031.33Show/hide
Query:  WSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSENQLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWA
        W +EDE+IVL++L +F   N +   Y+  FY +V K L + QVS +QL   I   +K+YL +    K++DL ++      V  LS RIWGG R++     
Subjt:  WSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSENQLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWA

Query:  KTKVMRDNNEQYLKDYV--VEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQL
                  +Y K ++  +EE+   ++CL+ S ++  KK+WE    +  E  + + +F  +L +L
Subjt:  KTKVMRDNNEQYLKDYV--VEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQL

KAG6607616.1 hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sororia]8.8e-4652.58Show/hide
Query:  MNHKNYEAPSCGELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDS-KDDDLDWNNEIRV
        M H +YEAP+C EL K + ++ S  WSK DE+IVLEKL EF  Q+K+ANYYT QFY  V+K LSV + +NQLCYMIYCLRKQYL++ K+ D D      +
Subjt:  MNHKNYEAPSCGELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDS-KDDDLDWNNEIRV

Query:  RVLELSERIWGGDRNEGWYWAKTKVMRDNNE-QYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNNNIHNTQ
        +V+ELS ++W  D        KTKV+ D+   ++LK YVV+ LG   +CL++ +V+ IK+DW+ FR VEDEFR++Q RF LQLC+L  ++HNTQ
Subjt:  RVLELSERIWGGDRNEGWYWAKTKVMRDNNE-QYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNNNIHNTQ

XP_022158998.1 probable transcription factor At4g01260 [Momordica charantia]1.8e-1130.37Show/hide
Query:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDD-------DLDWNNEIRVRVLELS
        E KK+  +K  F WS  DE ++L+   EF+ +N +   Y+  FY +V   LSV VS +QL   +Y LRK++L  KD+            N++  ++ E+S
Subjt:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDD-------DLDWNNEIRVRVLELS

Query:  ERIWGGDRNE------GWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQL----CQLNN
          IWG + N       G  W    V R   E +  + V+E +   + C+  +++  I+KDWE  +  +DE+        LQ+    C  NN
Subjt:  ERIWGGDRNE------GWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQL----CQLNN

XP_022951915.1 probable transcription factor At1g66420 [Cucurbita moschata]1.6e-1030.51Show/hide
Query:  KKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSENQLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIW
        KK ++++    W +EDE+IVL++L +F   N +   Y+  FY +V K L + QVS +QL   I   +K+YL +    K++DL ++      V  LS RIW
Subjt:  KKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSENQLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIW

Query:  GGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQL
        GG R++               +Y K ++  +EE+   ++CL+ S ++  KK+WE    +  E  + + +F  +L +L
Subjt:  GGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQL

XP_038877618.1 STOREKEEPER protein-like [Benincasa hispida]4.5e-1028.89Show/hide
Query:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIR-----VRVLELSER
        E +K  ++K  FRWS  DE  +LE   EF+ +N N   Y+  FY +V   LS +VS +QL   +Y LRK+++ +K +D + NN +R      +V ELS  
Subjt:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIR-----VRVLELSER

Query:  IWGGDRNEG-----------------WYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEF
        IWG D+                      W   +V R   +++     +E +   V  + T +++ ++K+WE  R   +++
Subjt:  IWGGDRNEG-----------------WYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEF

TrEMBL top hitse value%identityAlignment
A0A5A7UKP8 Uncharacterized protein7.1e-0928.71Show/hide
Query:  MMNHKNYEAPSCGELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSK------------
        M   K     S G  KK  R+K  F WSK +EL +L+KL+EF+S+N +      +FY ++      +VS+ Q+   I  L+ +YL++K            
Subjt:  MMNHKNYEAPSCGELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSK------------

Query:  -DDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNN
         +DD D+N++ R    ELS ++W G+ +E    + +K +   +  Y + +  E  G  V+    S  DA KKD +H   +E      + + T Q+ QL  
Subjt:  -DDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNN

Query:  NIHNTQTSN
        ++   + +N
Subjt:  NIHNTQTSN

A0A5N6NIF3 Uncharacterized protein9.0e-0429.79Show/hide
Query:  WSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDS----KD-DDLDWNNEIRVRVLELSERIWGGDRN
        WS++DE++VL++ ++F ++    +    +FY +V   L+  V+  QL   I  L+++YL++    KD +D +++N    ++ +LS+ IWG + N
Subjt:  WSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDS----KD-DDLDWNNEIRVRVLELSERIWGGDRN

A0A6J1DXL5 probable transcription factor At4g012608.9e-1230.37Show/hide
Query:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDD-------DLDWNNEIRVRVLELS
        E KK+  +K  F WS  DE ++L+   EF+ +N +   Y+  FY +V   LSV VS +QL   +Y LRK++L  KD+            N++  ++ E+S
Subjt:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDD-------DLDWNNEIRVRVLELS

Query:  ERIWGGDRNE------GWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQL----CQLNN
          IWG + N       G  W    V R   E +  + V+E +   + C+  +++  I+KDWE  +  +DE+        LQ+    C  NN
Subjt:  ERIWGGDRNE------GWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQL----CQLNN

A0A6J1GK86 probable transcription factor At1g664207.6e-1130.51Show/hide
Query:  KKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSENQLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIW
        KK ++++    W +EDE+IVL++L +F   N +   Y+  FY +V K L + QVS +QL   I   +K+YL +    K++DL ++      V  LS RIW
Subjt:  KKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSENQLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIW

Query:  GGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQL
        GG R++               +Y K ++  +EE+   ++CL+ S ++  KK+WE    +  E  + + +F  +L +L
Subjt:  GGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQL

A0A6J1I882 probable transcription factor At1g617302.9e-1030.34Show/hide
Query:  LKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLS-VQVSENQLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERI
        +KK ++++    W +EDE+IVL++L EF   N +   Y+  FY +V K LS  QVS +Q    I   +K+YL +    K++DL ++      V  LS+RI
Subjt:  LKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLS-VQVSENQLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERI

Query:  WGGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQL
        WG  R++               +Y K ++  +EE+   ++CL+ S ++  KK+WE    +  E  + + +F  +L +L
Subjt:  WGGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQL

SwissProt top hitse value%identityAlignment
C0SUU6 Probable transcription factor At1g115105.1e-0432.08Show/hide
Query:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIRV-----RVLELSER
        E KKT  Q+    W+++DE++VL+ L++       +N  T + Y  V K +S  VS+NQL   +  L+K+Y ++     D      V     +  ELS+ 
Subjt:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIRV-----RVLELSER

Query:  IWGGDR
        +WGG R
Subjt:  IWGGDR

Q9SYA9 Probable transcription factor At1g617302.1e-0531Show/hide
Query:  KKTVRQKDSFR--WSKEDELIVLEKLLEFSSQNKNANYY-TCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKD-DDLDWNNEIRVRVLELSERIWG
        +++V++   F+  WS+EDE++VL+ +++F +    + Y  T  FY ++ K +S +VS+NQ    I  LRK+Y+  +  ++  +      +  ELS+ IWG
Subjt:  KKTVRQKDSFR--WSKEDELIVLEKLLEFSSQNKNANYY-TCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKD-DDLDWNNEIRVRVLELSERIWG

Arabidopsis top hitse value%identityAlignment
AT1G11510.1 DNA-binding storekeeper protein-related transcriptional regulator3.6e-0532.08Show/hide
Query:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIRV-----RVLELSER
        E KKT  Q+    W+++DE++VL+ L++       +N  T + Y  V K +S  VS+NQL   +  L+K+Y ++     D      V     +  ELS+ 
Subjt:  ELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIRV-----RVLELSER

Query:  IWGGDR
        +WGG R
Subjt:  IWGGDR

AT1G61730.1 DNA-binding storekeeper protein-related transcriptional regulator1.5e-0631Show/hide
Query:  KKTVRQKDSFR--WSKEDELIVLEKLLEFSSQNKNANYY-TCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKD-DDLDWNNEIRVRVLELSERIWG
        +++V++   F+  WS+EDE++VL+ +++F +    + Y  T  FY ++ K +S +VS+NQ    I  LRK+Y+  +  ++  +      +  ELS+ IWG
Subjt:  KKTVRQKDSFR--WSKEDELIVLEKLLEFSSQNKNANYY-TCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKD-DDLDWNNEIRVRVLELSERIWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAATCACAAAAATTATGAAGCACCCAGTTGTGGTGAGTTGAAGAAGACGGTGAGGCAAAAAGATTCATTCCGATGGAGTAAGGAGGATGAATTAATTGTCCTTGA
GAAGCTGTTGGAATTTTCAAGCCAAAATAAGAATGCTAATTATTACACTTGTCAATTCTACATGTATGTGAACAAAATGTTAAGTGTTCAAGTGTCAGAGAATCAATTGT
GTTACATGATATATTGTTTGAGAAAACAATATTTAGATTCAAAGGATGATGATTTGGATTGGAATAATGAGATCAGGGTCAGAGTTTTGGAATTATCGGAGAGAATATGG
GGAGGTGATAGGAATGAAGGGTGGTACTGGGCAAAGACAAAAGTGATGAGAGATAATAATGAGCAATATTTGAAAGATTATGTTGTTGAAGAATTAGGGTTTCCGGTGGA
ATGCTTGTCAACTTCTATTGTCGATGCAATTAAGAAAGATTGGGAACATTTTCGATTTGTTGAGGATGAGTTTCGAACCATGCAACATCGATTTACTTTGCAGCTTTGTC
AACTCAACAACAACATTCATAACACTCAAACTTCTAATTCAAGTACCTCAAACCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAATCACAAAAATTATGAAGCACCCAGTTGTGGTGAGTTGAAGAAGACGGTGAGGCAAAAAGATTCATTCCGATGGAGTAAGGAGGATGAATTAATTGTCCTTGA
GAAGCTGTTGGAATTTTCAAGCCAAAATAAGAATGCTAATTATTACACTTGTCAATTCTACATGTATGTGAACAAAATGTTAAGTGTTCAAGTGTCAGAGAATCAATTGT
GTTACATGATATATTGTTTGAGAAAACAATATTTAGATTCAAAGGATGATGATTTGGATTGGAATAATGAGATCAGGGTCAGAGTTTTGGAATTATCGGAGAGAATATGG
GGAGGTGATAGGAATGAAGGGTGGTACTGGGCAAAGACAAAAGTGATGAGAGATAATAATGAGCAATATTTGAAAGATTATGTTGTTGAAGAATTAGGGTTTCCGGTGGA
ATGCTTGTCAACTTCTATTGTCGATGCAATTAAGAAAGATTGGGAACATTTTCGATTTGTTGAGGATGAGTTTCGAACCATGCAACATCGATTTACTTTGCAGCTTTGTC
AACTCAACAACAACATTCATAACACTCAAACTTCTAATTCAAGTACCTCAAACCTTTAG
Protein sequenceShow/hide protein sequence
MMNHKNYEAPSCGELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIRVRVLELSERIW
GGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNNNIHNTQTSNSSTSNL