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Clc08G00040 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00040
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr08:116614..118904
RNA-Seq ExpressionClc08G00040
SyntenyClc08G00040
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8729543.1 Binding partner of ACD11 1 [Hibiscus syriacus]1.7e-1729.51Show/hide
Query:  SFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTSV-------------WKI
        + W P++     KL  WK   LS  G++ L K++L ++P Y+ S+F  P++++  L  ++ +FLW G  E       +W   S+             ++ 
Subjt:  SFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTSV-------------WKI

Query:  FCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDSMRRLF-DLLNFPWCWPCKAYDALLQLTEGLGFHALVKFLLCD
           +R+G GD   FW D W   SPL   FPRLF++  +K+   + F +  +  WCW        +QL   L    LV+F  CD
Subjt:  FCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDSMRRLF-DLLNFPWCWPCKAYDALLQLTEGLGFHALVKFLLCD

RVW33074.1 putative ribonuclease H protein [Vitis vinifera]1.7e-1731.71Show/hide
Query:  EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTSV-------------
        + S FW PVI+ +  +L+ W++  LS GG+ITL +S LT++P Y+ S+F  P ++   +E++ R+FLW G  E    +L+NW+   +             
Subjt:  EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTSV-------------

Query:  ----------WKI----------FCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDS
                  WK           F    +G GD  RFW D W    PL +++PRL  +VT K++
Subjt:  ----------WKI----------FCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDS

RVW79096.1 putative ribonuclease H protein [Vitis vinifera]9.7e-1826.79Show/hide
Query:  FWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETT------SVWKIFCALRMGI
        +  PV++ +  +L+ WK   LS GG+ITL +S L++IP Y+ S+F  P ++ + +EKL R+FLW G++E    +LI W+          +  F  L +G 
Subjt:  FWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETT------SVWKIFCALRMGI

Query:  GDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKD--------------SMRRLFDLLNF----------------PWCWPCKAYDALLQLT-----EGLGFH
        G+  RFW+D W     L  +F  L+ +++ K+              S   LF + +F                 + W  KA   +  L      +   F 
Subjt:  GDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKD--------------SMRRLFDLLNF----------------PWCWPCKAYDALLQLT-----EGLGFH

Query:  ALVKFLLCDGVFVLLVRLGF----------ERNSRIFCGHELSKDAFWELVTLFASTWSSASKFF
        +L  +       V   R G           ERN+RIF   E +++  W+++ L++S W+S +  F
Subjt:  ALVKFLLCDGVFVLLVRLGF----------ERNSRIFCGHELSKDAFWELVTLFASTWSSASKFF

RVX05136.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.7e-1731.52Show/hide
Query:  EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTSV-------------
        + S FW PVI+ +  +L+ W++  LS GG+ITL +S LT++P Y+ S+F  P ++   +E++ R+FLW G  E    +L+NW+   +             
Subjt:  EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTSV-------------

Query:  -----------WKI----------FCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDS
                   WK           F    +G GD  RFW D W    PL +++PRL  +VT K++
Subjt:  -----------WKI----------FCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDS

XP_028066481.1 uncharacterized protein LOC114269378 [Camellia sinensis]7.4e-1833.33Show/hide
Query:  SFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTS-----------------
        S W PV+  V+ KL  WKR LLS  G++T+ K++L N+P+Y+ S+F  P +++  L+KL  +FLW G+      +L+ W+  +                 
Subjt:  SFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTS-----------------

Query:  ---VWKIFCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKD
           + K +  +++G G   RFW+DKWL    L ++FPRL+ + T K+
Subjt:  ---VWKIFCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKD

TrEMBL top hitse value%identityAlignment
A0A2N9EKH3 Reverse transcriptase domain-containing protein2.8e-1829.89Show/hide
Query:  EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETT---------------
        +V S W P+++ ++ +L  WKR+ LS+GG++TL KS L+N+P YY S+F  P  +   +E + RNFLW  S+E    +L+NW+                 
Subjt:  EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETT---------------

Query:  ----------------------------SVWKIFCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDS
                                     +W       +G G   RFW D W I SPL   +P L+ I  +KD+
Subjt:  ----------------------------SVWKIFCALRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDS

A0A2N9FIJ4 Reverse transcriptase domain-containing protein8.6e-2032.23Show/hide
Query:  EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETT---------------
        +VSS W P+++ +E KL  WK+L LS+GG++TL KS L+++P YY S+F  PN++   +EKL RNFLW G  +    +L+ W+T                
Subjt:  EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETT---------------

Query:  --------------------SVWKIFCA-LRM--GIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDSMRRLFDLLNFPWCWPCKAYDALL-------Q
                            S W+ F   +RM  GIGD   FW D W   +PL   FP LF   ++K +   +  LL+ P     + ++          +
Subjt:  --------------------SVWKIFCA-LRM--GIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDSMRRLFDLLNFPWCWPCKAYDALL-------Q

Query:  LTEGLGFHALV
        L E L F AL+
Subjt:  LTEGLGFHALV

A0A2N9FT15 Ribonuclease T(2)3.3e-1937.84Show/hide
Query:  SSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEG-SKEF--------GATNLINWETTSVWKIFCA
        ++ W P+I+ +E +L  WKRL LS+GGK++L KS L+N+P Y+ S+F  P  + +  EKL R+FLW G   EF           +L       +W+ F  
Subjt:  SSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEG-SKEF--------GATNLINWETTSVWKIFCA

Query:  LRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDSMRRLFDLLNF
          +G G   R W D+W    PL + FP LF I   KD+   + DLL+F
Subjt:  LRMGIGDDTRFWKDKWLIYSPLYMEFPRLFIIVTSKDSMRRLFDLLNF

A0A2N9HY20 Reverse transcriptase domain-containing protein2.8e-1831.51Show/hide
Query:  LIKCQPTIVILQETKYRVVRLVVGLNICCS-EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWE
        L+ C+ +++ LQ          +GL +  S + S+ W PV++ VE +L  WKRL LS+GGKITL KS L +IP Y+ S+F  P  + N LEKL R+FLW 
Subjt:  LIKCQPTIVILQETKYRVVRLVVGLNICCS-EVSSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWE

Query:  GSKEFGATNLINW----------------------------------ETTSVWKIFCALRMGIGD------------DTRFWKDKWLIYSPLYMEFPRLF
        G +E    +L++W                                  E  ++W++     MG+                RFW D W     L   FP LF
Subjt:  GSKEFGATNLINW----------------------------------ETTSVWKIFCALRMGIGD------------DTRFWKDKWLIYSPLYMEFPRLF

Query:  IIVTSKDSMRRLFDLLNFP
        +I  S+D+   + DL++FP
Subjt:  IIVTSKDSMRRLFDLLNFP

A0A2N9IKH8 Uncharacterized protein5.0e-2037.89Show/hide
Query:  SSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETT-----------------
        ++ W PV++ VE +L  WKRL LS+GGK+TL KSIL++IP Y+ S+F  P  + N LEKL R+FLW G  E    +L+NW                    
Subjt:  SSFWQPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETT-----------------

Query:  --SVWKIFCALRMGIGDDTR--FWKDKWLIYSPLYMEFPRLFIIVTSKDSMRRLFDLLNFP
          S+W  +C+ + G G   R  FW D W     L   F  LF++   KD++  + DL++FP
Subjt:  --SVWKIFCALRMGIGDDTR--FWKDKWLIYSPLYMEFPRLFIIVTSKDSMRRLFDLLNFP

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.7e-0729.73Show/hide
Query:  VIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINW
        +++ V  ++  W+   LS  G++TL K++L+++P++  S    P +++N L++L R FLW  + E    +L+ W
Subjt:  VIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTTCTCTCCCCGAGCTGCTCTTGATTTCCACGGTGAATGCAAGAATCCCCTGGATATTGCCTAGAAGCCAAAAGCCCATGCTCCAGGACAAAGTGCATAAACA
ATCTCTTGGACAATCTTCAACTTATGGTGGTGCCCTTGAAAGCCCAAGTACTGTCTTTTGGAATGTCAGAGGTTTGGGTGCCGCCAATAAGAAGCGCTCAGTAAAAGATG
CCTTAATCAAATGTCAGCCTACTATTGTTATTCTTCAAGAAACTAAGTATAGGGTTGTGCGATTGGTGGTTGGGCTTAATATTTGTTGCTCAGAGGTTTCCTCTTTTTGG
CAACCTGTCATTGATTATGTCGAAATAAAGCTGGAGCATTGGAAGAGGCTTCTCCTCTCTAGAGGGGGCAAAATTACTTTGGCTAAGTCTATTCTTACTAACATCCCTCT
TTACTACTTCTCGATATTTGCTTGTCCTAACAATATGATTAATTTGTTGGAAAAACTGATTAGGAATTTCTTATGGGAAGGTAGTAAGGAGTTTGGAGCCACTAATCTGA
TTAATTGGGAAACTACCTCAGTTTGGAAAATATTCTGCGCTCTAAGGATGGGTATTGGAGATGACACCAGGTTCTGGAAAGATAAATGGCTCATTTATTCGCCCCTCTAC
ATGGAATTTCCTAGACTTTTCATAATTGTGACTTCTAAGGACTCAATGCGAAGATTATTTGATCTGCTCAACTTTCCGTGGTGTTGGCCTTGCAAAGCCTATGATGCTCT
TCTTCAACTTACTGAAGGCCTTGGGTTTCATGCTCTGGTGAAATTTCTTCTGTGTGATGGGGTCTTTGTCCTTCTCGTGAGGCTTGGCTTTGAAAGAAACTCGAGGATCT
TCTGTGGCCATGAACTAAGCAAGGACGCCTTTTGGGAGCTTGTTACTCTTTTTGCTTCTACTTGGTCTTCTGCCTCTAAATTCTTTATTACTGAATTCAGAGTCCATCTT
TTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCTTCTCTCCCCGAGCTGCTCTTGATTTCCACGGTGAATGCAAGAATCCCCTGGATATTGCCTAGAAGCCAAAAGCCCATGCTCCAGGACAAAGTGCATAAACA
ATCTCTTGGACAATCTTCAACTTATGGTGGTGCCCTTGAAAGCCCAAGTACTGTCTTTTGGAATGTCAGAGGTTTGGGTGCCGCCAATAAGAAGCGCTCAGTAAAAGATG
CCTTAATCAAATGTCAGCCTACTATTGTTATTCTTCAAGAAACTAAGTATAGGGTTGTGCGATTGGTGGTTGGGCTTAATATTTGTTGCTCAGAGGTTTCCTCTTTTTGG
CAACCTGTCATTGATTATGTCGAAATAAAGCTGGAGCATTGGAAGAGGCTTCTCCTCTCTAGAGGGGGCAAAATTACTTTGGCTAAGTCTATTCTTACTAACATCCCTCT
TTACTACTTCTCGATATTTGCTTGTCCTAACAATATGATTAATTTGTTGGAAAAACTGATTAGGAATTTCTTATGGGAAGGTAGTAAGGAGTTTGGAGCCACTAATCTGA
TTAATTGGGAAACTACCTCAGTTTGGAAAATATTCTGCGCTCTAAGGATGGGTATTGGAGATGACACCAGGTTCTGGAAAGATAAATGGCTCATTTATTCGCCCCTCTAC
ATGGAATTTCCTAGACTTTTCATAATTGTGACTTCTAAGGACTCAATGCGAAGATTATTTGATCTGCTCAACTTTCCGTGGTGTTGGCCTTGCAAAGCCTATGATGCTCT
TCTTCAACTTACTGAAGGCCTTGGGTTTCATGCTCTGGTGAAATTTCTTCTGTGTGATGGGGTCTTTGTCCTTCTCGTGAGGCTTGGCTTTGAAAGAAACTCGAGGATCT
TCTGTGGCCATGAACTAAGCAAGGACGCCTTTTGGGAGCTTGTTACTCTTTTTGCTTCTACTTGGTCTTCTGCCTCTAAATTCTTTATTACTGAATTCAGAGTCCATCTT
TTATGA
Protein sequenceShow/hide protein sequence
MEASLPELLLISTVNARIPWILPRSQKPMLQDKVHKQSLGQSSTYGGALESPSTVFWNVRGLGAANKKRSVKDALIKCQPTIVILQETKYRVVRLVVGLNICCSEVSSFW
QPVIDYVEIKLEHWKRLLLSRGGKITLAKSILTNIPLYYFSIFACPNNMINLLEKLIRNFLWEGSKEFGATNLINWETTSVWKIFCALRMGIGDDTRFWKDKWLIYSPLY
MEFPRLFIIVTSKDSMRRLFDLLNFPWCWPCKAYDALLQLTEGLGFHALVKFLLCDGVFVLLVRLGFERNSRIFCGHELSKDAFWELVTLFASTWSSASKFFITEFRVHL
L