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Clc08G00160 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00160
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr08:327538..327918
RNA-Seq ExpressionClc08G00160
SyntenyClc08G00160
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035993.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-0659.62Show/hide
Query:  STLLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        S  L ++++K+     L LETCLVEN  NAWILD G+TNHVCSSLQ  SSF+
Subjt:  STLLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-0662Show/hide
Query:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        L  +++ KQ     L LETCLVEN  +AWI+DSG+TNHVCSS QGISS+Q
Subjt:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
KAA0045330.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]3.2e-0660Show/hide
Query:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        L+ +++ KQ     L LETCLVEN  +AWI+DSG+TNHVCSS QGISS++
Subjt:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-0660Show/hide
Query:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        L  +++ KQ     L LETCLVEN  +AWI+DSG+TNHVCSS QGISS++
Subjt:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
TYK04890.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-0663.27Show/hide
Query:  LRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        L ++++K      LFLETCLVEN  NAWILDS +TNHVCSSLQ  SSF+
Subjt:  LRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.7e-0660Show/hide
Query:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        L  +++ KQ     L LETCLVEN  +AWI+DSG+TNHVCSS QGISS++
Subjt:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
A0A5A7SZC6 Gag/pol protein1.6e-0659.62Show/hide
Query:  STLLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        S  L ++++K+     L LETCLVEN  NAWILD G+TNHVCSSLQ  SSF+
Subjt:  STLLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
A0A5A7TQ86 Retrotransposon protein, putative, Ty1-copia subclass1.6e-0660Show/hide
Query:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        L+ +++ KQ     L LETCLVEN  +AWI+DSG+TNHVCSS QGISS++
Subjt:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
A0A5A7TU93 Gag/pol protein9.2e-0762Show/hide
Query:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        L  +++ KQ     L LETCLVEN  +AWI+DSG+TNHVCSS QGISS+Q
Subjt:  LLRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
A0A5D3C0I8 Gag/pol protein1.6e-0663.27Show/hide
Query:  LRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
        L ++++K      LFLETCLVEN  NAWILDS +TNHVCSSLQ  SSF+
Subjt:  LRRRRKKQLNMIYLFLETCLVENYYNAWILDSGSTNHVCSSLQGISSFQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGGCAAATGTTGCTCAATTCAAGAAGTTCCACAAGGATTCATCCTCTGGAACTAAGTCTGTTCCCTCATCTTCTGGTTCTAAGAAGATCTAGAAAAAGA
AAGGAGGAAAGGGGAAGGCTGCCTCTGCTGGGAAAAACAAGGGTAAGGCCAAGGTGGCTGACAAGGGCAAGTGCTTCCACTGCAATGTGGATGGTCATTGGAAAT
GCAATTGCCCTAAGTACCTTGCTGAGAAGAAGAAGGAAAAAGCAGCTAAATATGATTTACTTGTTTTTAGAAACTTGTTTAGTGGAAAATTACTATAATGCTTGG
ATACTTGATTCGGGTTCCACTAATCACGTTTGCTCTTCTTTACAGGGAATTAGTTCCTTCCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGGCAAATGTTGCTCAATTCAAGAAGTTCCACAAGGATTCATCCTCTGGAACTAAGTCTGTTCCCTCATCTTCTGGTTCTAAGAAGATCTAGAAAAAGA
AAGGAGGAAAGGGGAAGGCTGCCTCTGCTGGGAAAAACAAGGGTAAGGCCAAGGTGGCTGACAAGGGCAAGTGCTTCCACTGCAATGTGGATGGTCATTGGAAAT
GCAATTGCCCTAAGTACCTTGCTGAGAAGAAGAAGGAAAAAGCAGCTAAATATGATTTACTTGTTTTTAGAAACTTGTTTAGTGGAAAATTACTATAATGCTTGG
ATACTTGATTCGGGTTCCACTAATCACGTTTGCTCTTCTTTACAGGGAATTAGTTCCTTCCAGTAA
Protein sequenceShow/hide protein sequence
MDGQMLLNSRSSTRIHPLELSLFPHLLVLRRSRKRKEERGRLPLLGKTRVRPRWLTRASASTAMWMVIGNAIALSTLLRRRRKKQLNMIYLFLETCLVENYYNAW
ILDSGSTNHVCSSLQGISSFQ