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Clc08G00220 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00220
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr08:356159..356440
RNA-Seq ExpressionClc08G00220
SyntenyClc08G00220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833161.1 DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002]1.8e-0637.21Show/hide
Query:  DVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTDVNALEISQVET-----KCH
        D+   FPDE V+K     PWY DIVN+LVC Q+PE+FNA Q +  + ++    + E P   R G+  +    + + ET      CH
Subjt:  DVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTDVNALEISQVET-----KCH

XP_022873105.1 uncharacterized protein LOC111392056, partial [Olea europaea var. sylvestris]1.3e-0445.28Show/hide
Query:  HDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKA
        H+R+ L +  SFPDE +L VT+ +PW+ADIVN+LV K+   D    + +  KA
Subjt:  HDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKA

XP_024953850.1 uncharacterized protein LOC112498130 [Citrus sinensis]7.7e-0531.91Show/hide
Query:  HDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSE-------TPRTMRSGVTDVNALEISQVETKCH
        H+  +L ++ +FPDE +L+V    PWYADIVN+LV +  PE+    Q    K+D    ++ E       + + +R  V +    E + + T CH
Subjt:  HDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSE-------TPRTMRSGVTDVNALEISQVETKCH

XP_038902405.1 uncharacterized protein LOC120089044 [Benincasa hispida]1.7e-0765.22Show/hide
Query:  DRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQ
        D  Q +VNASFPDE +LK+ E  PWY DIVNFLVCKQFPE++ + Q
Subjt:  DRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQ

XP_042752096.1 uncharacterized protein LOC122194868 [Lactuca sativa]2.9e-0442.11Show/hide
Query:  LDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSE
        L +   FPDE +  +T+  PWYADIVNFLV K++P+ F   Q    K+D    ++ E
Subjt:  LDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSE

TrEMBL top hitse value%identityAlignment
A0A2G9FWY3 Reverse transcriptase5.4e-0434.88Show/hide
Query:  VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTD-----VNALEISQVETKCH
        +N +FPDE +L  V    PWYADIVN+L C   P D +A Q + +  DT  + F + P   + G  +     V  +E++ +  +CH
Subjt:  VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTD-----VNALEISQVETKCH

A0A2G9G7U9 DNA-directed DNA polymerase7.0e-0446.94Show/hide
Query:  LDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKAD
        L ++ SFPDE +  V + +PWYADIVN+LV K  P+D +  Q    K+D
Subjt:  LDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKAD

A0A2G9GK35 Reverse transcriptase5.4e-0433.72Show/hide
Query:  VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTD-----VNALEISQVETKCH
        +N +FPD+ +L  V    PWYADIVN+L C   P D +A Q + +  DT  + F + P   + G  +     V  +E++ +  +CH
Subjt:  VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTD-----VNALEISQVETKCH

A0A2G9GUX6 Reverse transcriptase7.0e-0433.33Show/hide
Query:  VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTD-----VNALEISQVETKCHL
        +N +FPDE +L  V    PWYADIVN+L C   P D +  Q + +  DT  + F + P   + G+ +     V  +E++ +  +CH+
Subjt:  VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTD-----VNALEISQVETKCHL

A0A2G9HWF8 Reverse transcriptase5.4e-0434.88Show/hide
Query:  VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTD-----VNALEISQVETKCH
        +N +FPDE +L  V    PWYADIVN+L C   P D +A Q + +  DT  + F + P   + G  +     V  +E++ +  +CH
Subjt:  VNASFPDEAVLK-VTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTD-----VNALEISQVETKCH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACACGATCGAAAACAACTGGACGTTAACGCAAGCTTTCCAGATGAAGCTGTATTAAAAGTCACAGAATTCGCGCCATGGTATGCAGATATTGTCAACTTCTTGGT
GTGCAAGCAATTTCCCGAAGATTTCAACGCACTGCAGCTAAGGTCTTACAAAGCAGATACTTCTGGCCAACTCTTTTCAGAGACGCCAAGGACTATGCGATCAGGTGTGA
CAGATGTCAACGCACTGGAAATATCTCAAGTCGAAACGAAATGCCACTTACCTCTATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACACGATCGAAAACAACTGGACGTTAACGCAAGCTTTCCAGATGAAGCTGTATTAAAAGTCACAGAATTCGCGCCATGGTATGCAGATATTGTCAACTTCTTGGT
GTGCAAGCAATTTCCCGAAGATTTCAACGCACTGCAGCTAAGGTCTTACAAAGCAGATACTTCTGGCCAACTCTTTTCAGAGACGCCAAGGACTATGCGATCAGGTGTGA
CAGATGTCAACGCACTGGAAATATCTCAAGTCGAAACGAAATGCCACTTACCTCTATTTTAG
Protein sequenceShow/hide protein sequence
MEHDRKQLDVNASFPDEAVLKVTEFAPWYADIVNFLVCKQFPEDFNALQLRSYKADTSGQLFSETPRTMRSGVTDVNALEISQVETKCHLPLF