; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G00250 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00250
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr08:358856..359935
RNA-Seq ExpressionClc08G00250
SyntenyClc08G00250
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]1.4e-1628.08Show/hide
Query:  VAQVIQ-PTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVN
        +AQ IQ    V  FY      + + + V    +S+  + IN +F L D    E +  +    E E+   L T+A  G+EWN S +G  T + + L     
Subjt:  VAQVIQ-PTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVN

Query:  LWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAEFMEDAPVRAVNEVLSAQSLRRILKDSPHL
        +W +F+K  L+PT H   +S+D  ++++ ++ G  ++VG +I  +IR         LFFP L+TRLC NA F+ +         + A ++ RI ++ P  
Subjt:  LWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAEFMEDAPVRAVNEVLSAQSLRRILKDSPHL

Query:  LEAANSKKRPTKSQEPSSPHPPQPKKRKLVKKNFEIKASSSQPSEGKEAVQLDANTQALT
                    +Q+PSS  P                A+SS  + G    QL A  Q L+
Subjt:  LEAANSKKRPTKSQEPSSPHPPQPKKRKLVKKNFEIKASSSQPSEGKEAVQLDANTQALT

WP_217833181.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.6e-4168.03Show/hide
Query:  LVKEPTKEAAKSRKKQFSGLYTEV----------------------------AQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIA
        +V+EPTKEAAKSRKKQ+SGLYTEV                             QVIQPTAVEAFYEGTIH KAH VKVEDEVISFEPQEIN LFDL +IA
Subjt:  LVKEPTKEAAKSRKKQFSGLYTEV----------------------------AQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIA

Query:  ATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIA
          EGNRIMS P + EMNDALT IAKPGSEWNTSPKGIQ+L P CLIA
Subjt:  ATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIA

XP_038876674.1 chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]3.4e-2336.17Show/hide
Query:  RNKKGKEKLVKEPTKEAAKSRKKQFS----GLYTEVAQVIQPTA-----VEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMP
        + KKGKE   +E  ++  +  KKQ       L  E  + I+ ++     V  FY G +H     V ++ E +SF  ++IN ++ + D     GN+I+  P
Subjt:  RNKKGKEKLVKEPTKEAAKSRKKQFS----GLYTEVAQVIQPTA-----VEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMP

Query:  IEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGL
         E +M DAL  + + G +W+ S KG+ TL    L+ E  LW+Y +K+ LI T HD ++SRD  M  YCI+R I +DVG +IA Q+R L
Subjt:  IEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGL

XP_038898613.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida]1.1e-1837.9Show/hide
Query:  YTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAE
        + +   +I P  V  FY G +H     V  + E + F  + INGL+ + D     GN+I+  P E  M +AL  +A+PG+ W  SPKGI+TL    L+++
Subjt:  YTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAE

Query:  VNLWLYFIKRSLIPTMHDASISRD
          LW+Y +K+ LIPT HD ++S+D
Subjt:  VNLWLYFIKRSLIPTMHDASISRD

XP_038904385.1 uncharacterized protein LOC120090747 [Benincasa hispida]4.8e-2540.27Show/hide
Query:  YTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAE
        + +   +I PT V AFY+G +H     V ++  ++ F  ++IN L+ + DI    GN+I+  P E +M DAL T+ + G++W+ S KGI+TL  + L+ E
Subjt:  YTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAE

Query:  VNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIR
          LW+Y +KR +IPT HD ++SRD  M  YCI  GI +DV  +IA Q +
Subjt:  VNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIR

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)4.9e-1528.04Show/hide
Query:  VEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSL
        V  FY        + V V    +S+  + IN +F L D    E +  +    E ++   L T+A  G+EWN S +G  T + + L     +W +F+K  L
Subjt:  VEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSL

Query:  IPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAE---FMEDAPVRAVNEVLSAQSLRRILKDSPHLLEAANSK
        +PT H  ++S+D  ++++ ++ G  ++VG +I  +IR         LFFP L+TRLC NA     + +  +    E+  A ++ RI ++ P         
Subjt:  IPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAE---FMEDAPVRAVNEVLSAQSLRRILKDSPHLLEAANSK

Query:  KRPTKSQEPSSPHP
             +Q+PSS  P
Subjt:  KRPTKSQEPSSPHP

A0A2P5BCG4 Uncharacterized protein (Fragment)3.7e-1527.57Show/hide
Query:  VEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSL
        V  FY      + + V V    +S+  + IN +F L D    E +  +    + ++   L T+A  G+EWN S +G  T + + L     +W +F+K  L
Subjt:  VEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSL

Query:  IPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAE---FMEDAPVRAVNEVLSAQSLRRILKDSPHLLEAANSK
        +PT H  ++S+D  ++++ ++ G  ++VG +I  +IR         LFFP L+TRLC NA     + +  +    E+  A ++ RI ++ P         
Subjt:  IPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAE---FMEDAPVRAVNEVLSAQSLRRILKDSPHLLEAANSK

Query:  KRPTKSQEPSSPHP
             +Q+PSS  P
Subjt:  KRPTKSQEPSSPHP

A0A2P5DXM3 Uncharacterized protein6.8e-1728.08Show/hide
Query:  VAQVIQ-PTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVN
        +AQ IQ    V  FY      + + + V    +S+  + IN +F L D    E +  +    E E+   L T+A  G+EWN S +G  T + + L     
Subjt:  VAQVIQ-PTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVN

Query:  LWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAEFMEDAPVRAVNEVLSAQSLRRILKDSPHL
        +W +F+K  L+PT H   +S+D  ++++ ++ G  ++VG +I  +IR         LFFP L+TRLC NA F+ +         + A ++ RI ++ P  
Subjt:  LWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAEFMEDAPVRAVNEVLSAQSLRRILKDSPHL

Query:  LEAANSKKRPTKSQEPSSPHPPQPKKRKLVKKNFEIKASSSQPSEGKEAVQLDANTQALT
                    +Q+PSS  P                A+SS  + G    QL A  Q L+
Subjt:  LEAANSKKRPTKSQEPSSPHPPQPKKRKLVKKNFEIKASSSQPSEGKEAVQLDANTQALT

A0A5A7TZE0 Protein MNN4-like2.9e-1535.1Show/hide
Query:  KKQFSGLYTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLV
        K+ F G+ T     I+P+ +  FY G+I+ + H   V+ ++++F P+ +N L+ L     T    I   P +++M +AL  +A PG +W+ +P     L 
Subjt:  KKQFSGLYTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKPGSEWNTSPKGIQTLV

Query:  PTCLIAEVNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCII
        P  L    ++WL FIK++L+PT HD +IS +  M++YCIM  I L+V  II
Subjt:  PTCLIAEVNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCII

A0A5A7U0U4 Uncharacterized protein9.2e-1428.09Show/hide
Query:  EKLVKEPTKEAAKSRKKQFSGLYTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKP
        E++ K+  K+  K  K     +       I+P+ V  FY G I+ + H  +V+ + I+F P  IN ++ L +     G+ I   P +  + +AL      
Subjt:  EKLVKEPTKEAAKSRKKQFSGLYTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVEMNDALTTIAKP

Query:  GSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAEFMEDA
        G++W+  P  +  L P  L  E ++WL FIK++++PT HD  IS +  M++Y I+  I ++VG II   +     +PR    F  L+ +L    +  E+A
Subjt:  GSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAEFMEDA

Query:  PVRAVNEVLSAQSLRRILKDSPHLLEAANSKKRPT
              ++  A+  + I    P LL +   KK P+
Subjt:  PVRAVNEVLSAQSLRRILKDSPHLLEAANSKKRPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCAAGCAGAGCAAGGAGAACGTCTGCTAGTCCCATCAATAGGAACAAGAAGGGAAAAGAGAAATTGGTTAAAGAACCAACAAAAGAGGCGGCGAAGAGCCGAAA
GAAACAATTTAGTGGGCTCTATACTGAAGTCGCCCAAGTCATCCAACCCACCGCTGTGGAGGCATTTTACGAAGGAACCATTCACCGCAAGGCACACAAAGTCAAAGTTG
AAGATGAGGTGATTTCCTTCGAGCCTCAGGAAATCAACGGGTTGTTTGATCTTCTCGACATCGCGGCGACAGAGGGTAATAGAATAATGTCGATGCCTATAGAAGTCGAA
ATGAATGACGCCCTTACAACCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAGACATTGGTGCCAACTTGCTTGATCGCCGAGGTCAACTTGTG
GCTTTACTTCATCAAGCGGTCGCTAATCCCCACAATGCATGACGCCTCAATTTCAAGGGACTGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGG
GATGCATCATTGCCCCACAGATTCGGGGGTTGTTTTTAAACCCAAGGAGTCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCACCAACGCAGAATTCATGGAAGAT
GCACCAGTCAGAGCAGTAAATGAAGTTCTTTCAGCCCAAAGTCTCAGACGGATATTAAAGGACTCACCGCATCTGCTTGAGGCGGCCAACTCAAAGAAGAGGCCGACCAA
GTCACAAGAACCATCATCCCCCCACCCTCCTCAACCCAAGAAGAGGAAACTTGTCAAGAAGAATTTTGAGATTAAGGCGTCAAGTTCACAACCTAGTGAAGGCAAAGAAG
CTGTTCAGCTCGATGCCAACACACAAGCCTTGACCATTTATACTCCTCCCATCGACTCAATCCCTGAGGAGCCCTCTTCACCACCAACTTCCCCTTCCCCTTCCCCGAAA
ATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGCAAGCAGAGCAAGGAGAACGTCTGCTAGTCCCATCAATAGGAACAAGAAGGGAAAAGAGAAATTGGTTAAAGAACCAACAAAAGAGGCGGCGAAGAGCCGAAA
GAAACAATTTAGTGGGCTCTATACTGAAGTCGCCCAAGTCATCCAACCCACCGCTGTGGAGGCATTTTACGAAGGAACCATTCACCGCAAGGCACACAAAGTCAAAGTTG
AAGATGAGGTGATTTCCTTCGAGCCTCAGGAAATCAACGGGTTGTTTGATCTTCTCGACATCGCGGCGACAGAGGGTAATAGAATAATGTCGATGCCTATAGAAGTCGAA
ATGAATGACGCCCTTACAACCATCGCCAAACCGGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAGACATTGGTGCCAACTTGCTTGATCGCCGAGGTCAACTTGTG
GCTTTACTTCATCAAGCGGTCGCTAATCCCCACAATGCATGACGCCTCAATTTCAAGGGACTGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGG
GATGCATCATTGCCCCACAGATTCGGGGGTTGTTTTTAAACCCAAGGAGTCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCACCAACGCAGAATTCATGGAAGAT
GCACCAGTCAGAGCAGTAAATGAAGTTCTTTCAGCCCAAAGTCTCAGACGGATATTAAAGGACTCACCGCATCTGCTTGAGGCGGCCAACTCAAAGAAGAGGCCGACCAA
GTCACAAGAACCATCATCCCCCCACCCTCCTCAACCCAAGAAGAGGAAACTTGTCAAGAAGAATTTTGAGATTAAGGCGTCAAGTTCACAACCTAGTGAAGGCAAAGAAG
CTGTTCAGCTCGATGCCAACACACAAGCCTTGACCATTTATACTCCTCCCATCGACTCAATCCCTGAGGAGCCCTCTTCACCACCAACTTCCCCTTCCCCTTCCCCGAAA
ATCTAA
Protein sequenceShow/hide protein sequence
MDASRARRTSASPINRNKKGKEKLVKEPTKEAAKSRKKQFSGLYTEVAQVIQPTAVEAFYEGTIHRKAHKVKVEDEVISFEPQEINGLFDLLDIAATEGNRIMSMPIEVE
MNDALTTIAKPGSEWNTSPKGIQTLVPTCLIAEVNLWLYFIKRSLIPTMHDASISRDCAMVIYCIMRGIRLDVGCIIAPQIRGLFLNPRSQLFFPFLVTRLCTNAEFMED
APVRAVNEVLSAQSLRRILKDSPHLLEAANSKKRPTKSQEPSSPHPPQPKKRKLVKKNFEIKASSSQPSEGKEAVQLDANTQALTIYTPPIDSIPEEPSSPPTSPSPSPK
I