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Clc08G00365 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00365
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationClcChr08:541456..542696
RNA-Seq ExpressionClc08G00365
SyntenyClc08G00365
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040554.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.6e-2342.7Show/hide
Query:  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM------------------
        F     +DYILT+   T           D +SS+++        ++ K D V D  KY KDNKT+  HLLNHM+D +FDLF+                  
Subjt:  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM------------------

Query:  ---------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
                       F M DDK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  ---------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.4e-2342.37Show/hide
Query:  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM-------------------
        F     +DY+LT+        T +    D        + V   D+ K D V D  KY KDNKT+  HLLNHM+D +FDLF+                   
Subjt:  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM-------------------

Query:  --------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
                      F M DDK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  --------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.4e-2342.37Show/hide
Query:  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM-------------------
        F     +DY+LT+        T +    D        + V   D+ K D V D  KY KDNKT+  HLLNHM+D +FDLF+                   
Subjt:  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM-------------------

Query:  --------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
                      F M DDK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  --------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

TYK05597.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.6e-2342.7Show/hide
Query:  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM------------------
        F     +DYILT+   T           D +SS+++        ++ K D V D  KY KDNKT+  HLLNHM+D +FDLF+                  
Subjt:  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM------------------

Query:  ---------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
                       F M DDK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  ---------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

XP_016902586.1 PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo]8.8e-2448.1Show/hide
Query:  TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD
        TST SD           S+ VV  D+ K D VAD  KY KDNKT+  HLLNHM+D +FDLF+                                 F M D
Subjt:  TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD

Query:  DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
        DK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

TrEMBL top hitse value%identityAlignment
A0A1S4E2X9 uncharacterized protein LOC1079917424.3e-2448.1Show/hide
Query:  TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD
        TST SD           S+ VV  D+ K D VAD  KY KDNKT+  HLLNHM+D +FDLF+                                 F M D
Subjt:  TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD

Query:  DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
        DK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  DKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

A0A5A7TAR9 Ty1-copia retrotransposon protein1.2e-2342.7Show/hide
Query:  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM------------------
        F     +DYILT+   T           D +SS+++        ++ K D V D  KY KDNKT+  HLLNHM+D +FDLF+                  
Subjt:  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM------------------

Query:  ---------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
                       F M DDK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  ---------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

A0A5A7U9X9 Ty1-copia retrotransposon protein1.6e-2342.37Show/hide
Query:  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM-------------------
        F     +DY+LT+        T +    D        + V   D+ K D V D  KY KDNKT+  HLLNHM+D +FDLF+                   
Subjt:  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM-------------------

Query:  --------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
                      F M DDK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  --------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

A0A5D3BZI1 Ty1-copia retrotransposon protein1.6e-2342.37Show/hide
Query:  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM-------------------
        F     +DY+LT+        T +    D        + V   D+ K D V D  KY KDNKT+  HLLNHM+D +FDLF+                   
Subjt:  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM-------------------

Query:  --------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
                      F M DDK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  --------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

A0A5D3C1A6 Ty1-copia retrotransposon protein1.2e-2342.7Show/hide
Query:  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM------------------
        F     +DYILT+   T           D +SS+++        ++ K D V D  KY KDNKT+  HLLNHM+D +FDLF+                  
Subjt:  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFM------------------

Query:  ---------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL
                       F M DDK +  + HEY+NLVANVL++ MKMCEILQAN  L KFPPSW+DYRNHLK+ KKDL L
Subjt:  ---------------FWMMDDKRLWTRFHEYKNLVANVLAKVMKMCEILQANQQLTKFPPSWSDYRNHLKY-KKDLTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTC
AGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACA
TGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTT
ATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTC
AGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACA
TGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTTTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTT
ATGAAGATGTGTGAGATTCTTCAAGCAAACCAACAGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG
Protein sequenceShow/hide protein sequence
MGKELSHIGSFSNAKRIDYILTSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFMFWMMDDKRLWTRFHEYKNLVANVLAKV
MKMCEILQANQQLTKFPPSWSDYRNHLKYKKDLTL