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Clc08G00430 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00430
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionIntegrase catalytic domain-containing protein
Genome locationClcChr08:734125..734403
RNA-Seq ExpressionClc08G00430
SyntenyClc08G00430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5442054.1 hypothetical protein F2P56_036921, partial [Juglans regia]8.7e-1757.14Show/hide
Query:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCK------RDGGRGCGHDYGRGRG
        ++D RV++KIL  LN  FDH+V+AI+ESK+LE M+IDELNGSLR ++ERMNRG  +Q+EQ LQAK++ K       +G RG G   GRGRG
Subjt:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCK------RDGGRGCGHDYGRGRG

KAF5480099.1 hypothetical protein F2P56_000869, partial [Juglans regia]8.7e-1757.14Show/hide
Query:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCK------RDGGRGCGHDYGRGRG
        ++D RV++KIL  LN  FDH+V+AI+ESK+LE M+IDELNGSLR ++ERMNRG  +Q+EQ LQAK++ K       +G RG G   GRGRG
Subjt:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCK------RDGGRGCGHDYGRGRG

KZV30698.1 hypothetical protein F511_19491 [Dorcoceras hygrometricum]3.3e-1657.89Show/hide
Query:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG
        MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE MT+DELNGSLR ++ERMN G  +Q+E VLQAK   K  GG   RG G   GRGRG
Subjt:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG

XP_016195705.1 uncharacterized protein LOC107636724 [Arachis ipaensis]5.6e-1652.13Show/hide
Query:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDG--------GRGCGHDYGRGRGH
        ++D RV++KI+ FLN  F HVV+AI+ESK+L+TM+ID+LNGSLR ++ERM++G  +++E VLQAK++    G        GRG GH  GRGRG+
Subjt:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDG--------GRGCGHDYGRGRGH

XP_035543079.1 uncharacterized protein LOC118346300, partial [Juglans regia]8.7e-1757.14Show/hide
Query:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCK------RDGGRGCGHDYGRGRG
        ++D RV++KIL  LN  FDH+V+AI+ESK+LE M+IDELNGSLR ++ERMNRG  +Q+EQ LQAK++ K       +G RG G   GRGRG
Subjt:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCK------RDGGRGCGHDYGRGRG

TrEMBL top hitse value%identityAlignment
A0A2Z7BF03 Uncharacterized protein1.6e-1657.89Show/hide
Query:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG
        MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE MT+DELNGSLR ++ERMN G  +Q+E VLQAK   K  GG   RG G   GRGRG
Subjt:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG

A0A2Z7BMK3 Integrase, catalytic core domain containing protein2.7e-1657.89Show/hide
Query:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG
        MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE MT+DELNGSLR ++ERMN G  +Q E VLQAK   K  GG   RG G   GRGRG
Subjt:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG

A0A2Z7BQJ1 Integrase, catalytic core domain containing protein2.7e-1657.89Show/hide
Query:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG
        MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE MT+DELNGSLR ++ERMN G  +Q E VLQAK   K  GG   RG G   GRGRG
Subjt:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG

A0A2Z7CD47 CCHC-type domain-containing protein9.7e-1454.74Show/hide
Query:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG
        MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE M +DEL GSLR ++ERMN G  +Q   VLQAK   K  GG   RG G   GRGRG
Subjt:  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG

A0A6P9E6H1 uncharacterized protein LOC1183463004.2e-1757.14Show/hide
Query:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCK------RDGGRGCGHDYGRGRG
        ++D RV++KIL  LN  FDH+V+AI+ESK+LE M+IDELNGSLR ++ERMNRG  +Q+EQ LQAK++ K       +G RG G   GRGRG
Subjt:  MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCK------RDGGRGCGHDYGRGRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGCTTGTTATGCAAGATGCTCGTGTGATCAAGAAGATTCTCCACTTTCTCAACAAAACGTTTGACCATGTGGTGCTAGCAATCAAGGAGTCAAAAAACTTGGA
GACGATGACTATTGATGAATTAAATGGATCACTCCGAGTTTACAAGGAAAGGATGAACCGTGGCAACCCGAAGCAACTGGAGCAAGTCTTGCAAGCAAAGATGACTTGCA
AAAGAGATGGTGGACGAGGTTGTGGTCATGATTATGGAAGAGGTCGAGGCCACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGCTTGTTATGCAAGATGCTCGTGTGATCAAGAAGATTCTCCACTTTCTCAACAAAACGTTTGACCATGTGGTGCTAGCAATCAAGGAGTCAAAAAACTTGGA
GACGATGACTATTGATGAATTAAATGGATCACTCCGAGTTTACAAGGAAAGGATGAACCGTGGCAACCCGAAGCAACTGGAGCAAGTCTTGCAAGCAAAGATGACTTGCA
AAAGAGATGGTGGACGAGGTTGTGGTCATGATTATGGAAGAGGTCGAGGCCACAAATGA
Protein sequenceShow/hide protein sequence
MKQLVMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGGRGCGHDYGRGRGHK