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Clc08G00490 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00490
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L36
Genome locationClcChr08:933730..939421
RNA-Seq ExpressionClc08G00490
SyntenyClc08G00490
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000509 - Ribosomal protein L36e
IPR038097 - Ribosomal protein L36e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574185.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]3.6e-4593.58Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK+SKRVLFVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE S+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

KAG6579388.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]3.2e-4689.74Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKKILNSYKGS
        RAGGGGEKK   ++ GS
Subjt:  RAGGGGEKKILNSYKGS

KAG7013242.1 60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-4593.58Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK+SKRVLFVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE S+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

XP_010108352.1 60S ribosomal protein L36-2 [Morus notabilis]2.7e-4593.58Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGH+VTKKELA RPS+RKGKTSKRV FVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

XP_022922109.1 60S ribosomal protein L36-2-like [Cucurbita moschata]1.2e-4594.5Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

TrEMBL top hitse value%identityAlignment
A0A6J1E2F7 60S ribosomal protein L365.9e-4694.5Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

A0A6J1H2C5 60S ribosomal protein L361.7e-4593.58Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK+SKRVLFVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE S+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

A0A6J1IDA3 60S ribosomal protein L365.9e-4694.5Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

A0A6J1K6N3 60S ribosomal protein L361.7e-4593.58Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK+SKRVLFVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE S+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

W9SA20 60S ribosomal protein L361.3e-4593.58Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        MAPKQPNTGLFVGLNKGH+VTKKELA RPS+RKGKTSKRV FVRSLIREVAGFAPYEKRITELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGGEKK
        RAGGGGEKK
Subjt:  RAGGGGEKK

SwissProt top hitse value%identityAlignment
O80929 60S ribosomal protein L36-18.3e-3778.3Show/hide
Query:  TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGG--
        TGLFVGLNKGH+VT++ELA RP++RKGKTSKR +F+R LIREVAG APYEKRITELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKMR+ GG  
Subjt:  TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGG--

Query:  -GEKKI
          EKK+
Subjt:  -GEKKI

P52866 60S ribosomal protein L361.8e-3177.08Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNV
        MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGKTSKR  FVR+LIREVAGF PYEKRITELLKVGKD R+LKV + K+G  + +K+  EER +V
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNV

Q9LRB8 60S ribosomal protein L361.1e-2567.71Show/hide
Query:  VGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGE
        VGLNKGH VTKK    RPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKD R+LK+ KRKLGTH R KKKREE + VLRKM+A   GE
Subjt:  VGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGE

Q9LZ57 60S ribosomal protein L36-36.3e-3779.81Show/hide
Query:  TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGG-
        TGLFVGLNKGH+VTK+E   RP+NRKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKMR+GG G 
Subjt:  TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGG-

Query:  -EKK
         EKK
Subjt:  -EKK

Q9M352 60S ribosomal protein L36-21.5e-3877.48Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        M   Q  TGLFVGLNKGH+VT++ELA RP +RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGG--EKK
        R+GGGG  EKK
Subjt:  RAGGGG--EKK

Arabidopsis top hitse value%identityAlignment
AT2G37600.1 Ribosomal protein L36e family protein5.9e-3878.3Show/hide
Query:  TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGG--
        TGLFVGLNKGH+VT++ELA RP++RKGKTSKR +F+R LIREVAG APYEKRITELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKMR+ GG  
Subjt:  TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGG--

Query:  -GEKKI
          EKK+
Subjt:  -GEKKI

AT3G53740.2 Ribosomal protein L36e family protein1.1e-3977.48Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        M   Q  TGLFVGLNKGH+VT++ELA RP +RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGG--EKK
        R+GGGG  EKK
Subjt:  RAGGGG--EKK

AT3G53740.3 Ribosomal protein L36e family protein1.1e-3977.48Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        M   Q  TGLFVGLNKGH+VT++ELA RP +RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGG--EKK
        R+GGGG  EKK
Subjt:  RAGGGG--EKK

AT3G53740.4 Ribosomal protein L36e family protein1.1e-3977.48Show/hide
Query:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM
        M   Q  TGLFVGLNKGH+VT++ELA RP +RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKM
Subjt:  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKM

Query:  RAGGGG--EKK
        R+GGGG  EKK
Subjt:  RAGGGG--EKK

AT5G02450.1 Ribosomal protein L36e family protein4.5e-3879.81Show/hide
Query:  TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGG-
        TGLFVGLNKGH+VTK+E   RP+NRKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKMR+GG G 
Subjt:  TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGG-

Query:  -EKK
         EKK
Subjt:  -EKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCCCTACGGCCCTCCAATCGGAAAGGAAAA
ACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAGGTTGGAAAGGACACG
CGTTCTCTGAAGGTAGCCAAAAGAAAGCTCGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAAGGTCCAATGTTCTAAGAAAAATGAGGGCCGGTGGAGGT
GGTGAGAAGAAGATTCTAAACAGTTACAAAGGAAGTTGGTCCAGGGGCATGCATGAATTGGCTTACCATACTAACTGCAACGTCAATGTCAGGACATGTGTGAGA
GAGGTATATGAGTCTTCCCACAAGTCTCTGGGAGAAGTGGTCGTGAGCGAGAGCAAGAATTTTTGGAAAGTAAAATTTTGGCTAAGTGTTGGCCAAGTCCATGCG
TTGTGGTGGATTTATGGAGGAAAAGCAGAGCTTACAAGATTGATAAGCAATCTGAAACAGCATGAGGTGATTCCGGAATACCGAGAGAACAAGGAGAAGTTAAGC
CTTGAAACTTTGAGGATTCTCGCTTACAATGTTAGTTTAGAAAAGGAAGAAGATTTAATGTTAAATAACGCAAGTATGATTTACAATGAACTGTTTAATATGCAT
AATGTTGATTGCATTACTCATAAGAGGAGGCTCAGTGCTCAAGGACACGAGAAGGCACGTGAGTTTCTCCAGGACCCAGTACTCAAGGACATGAGAAGGTACATG
GGGAACCCGTCATATTCCTATGTGCACATAGAGGTTGATTTGGCTGGTGCGTCGAGTTTGCTCCGCATTGAGCCAGAGACGATTTCAACGTTGGGAGTGTTGAGC
CTCGCTCCACCCCAACTAAGGACTAAGGTAACGCATGGTCAGGGTGAACGCATGGAAGTAACCCGAGAGTTTGAAGGAAAAGAAGTGAAACGCATAAAAGGAGAT
GTAAGCATTGGCGATGATAAGACGCATAAGCAAGAAAGAAATAAAGTTATGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCCCTACGGCCCTCCAATCGGAAAGGAAAA
ACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAGGTTGGAAAGGACACG
CGTTCTCTGAAGGTAGCCAAAAGAAAGCTCGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAAGGTCCAATGTTCTAAGAAAAATGAGGGCCGGTGGAGGT
GGTGAGAAGAAGATTCTAAACAGTTACAAAGGAAGTTGGTCCAGGGGCATGCATGAATTGGCTTACCATACTAACTGCAACGTCAATGTCAGGACATGTGTGAGA
GAGGTATATGAGTCTTCCCACAAGTCTCTGGGAGAAGTGGTCGTGAGCGAGAGCAAGAATTTTTGGAAAGTAAAATTTTGGCTAAGTGTTGGCCAAGTCCATGCG
TTGTGGTGGATTTATGGAGGAAAAGCAGAGCTTACAAGATTGATAAGCAATCTGAAACAGCATGAGGTGATTCCGGAATACCGAGAGAACAAGGAGAAGTTAAGC
CTTGAAACTTTGAGGATTCTCGCTTACAATGTTAGTTTAGAAAAGGAAGAAGATTTAATGTTAAATAACGCAAGTATGATTTACAATGAACTGTTTAATATGCAT
AATGTTGATTGCATTACTCATAAGAGGAGGCTCAGTGCTCAAGGACACGAGAAGGCACGTGAGTTTCTCCAGGACCCAGTACTCAAGGACATGAGAAGGTACATG
GGGAACCCGTCATATTCCTATGTGCACATAGAGGTTGATTTGGCTGGTGCGTCGAGTTTGCTCCGCATTGAGCCAGAGACGATTTCAACGTTGGGAGTGTTGAGC
CTCGCTCCACCCCAACTAAGGACTAAGGTAACGCATGGTCAGGGTGAACGCATGGAAGTAACCCGAGAGTTTGAAGGAAAAGAAGTGAAACGCATAAAAGGAGAT
GTAAGCATTGGCGATGATAAGACGCATAAGCAAGAAAGAAATAAAGTTATGTTGTGA
Protein sequenceShow/hide protein sequence
MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDTRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGG
GEKKILNSYKGSWSRGMHELAYHTNCNVNVRTCVREVYESSHKSLGEVVVSESKNFWKVKFWLSVGQVHALWWIYGGKAELTRLISNLKQHEVIPEYRENKEKLS
LETLRILAYNVSLEKEEDLMLNNASMIYNELFNMHNVDCITHKRRLSAQGHEKAREFLQDPVLKDMRRYMGNPSYSYVHIEVDLAGASSLLRIEPETISTLGVLS
LAPPQLRTKVTHGQGERMEVTREFEGKEVKRIKGDVSIGDDKTHKQERNKVML