CuGenDBv2

Gene ID	Clc08G00600
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	ATP synthase subunit alpha
Genome location	ClcChr08:1068854..1069415
RNA-Seq Expression	Clc08G00600
Synteny	Clc08G00600
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0005739 - mitochondrion (cellular component) GO:0031090 - organelle membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ABD61049.1 ATPase alpha subunit, partial [Eucommia ulmoides]

7.5e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

ABY66740.1 atp1, partial [Eucommia ulmoides]

7.5e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

ADL63198.1 Atp1, partial [Dipentodon sinicus]

7.5e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

YP_003587244.1 ATPase subunit 1 [Citrullus lanatus]

7.5e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

YP_009913606.1 ATPase subunit 1 [Luffa acutangula]

7.5e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

TrEMBL top hits

e value

%identity

Alignment

A0A7D5Y002 ATP synthase subunit alpha

3.6e-69

94.48

Show/hide

Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

A1XIU0 ATP synthase subunit alpha (Fragment)

3.6e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

B0FA11 ATP synthase subunit alpha (Fragment)

3.6e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

D5I3B4 ATP synthase subunit alpha

3.6e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

E5DK80 ATP synthase subunit alpha (Fragment)

3.6e-69

94.48

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

SwissProt top hits

e value

%identity

Alignment

P05492 ATP synthase subunit alpha, mitochondrial

8.3e-71

93.1

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        + DHERRRV+VK PGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

P05493 ATP synthase subunit alpha, mitochondrial

4.9e-71

93.79

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSE NALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

P05495 ATP synthase subunit alpha, mitochondrial

1.1e-70

93.1

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQ+NSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSE NALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

P24459 ATP synthase subunit alpha, mitochondrial

4.9e-71

93.79

Show/hide

Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSE NALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

Q01915 ATP synthase subunit alpha, mitochondrial

4.9e-71

93.79

Show/hide

Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHERRRV+VKAPGIIERKSVHEPMQTGLKAVDSLVP+GRGQRELII +RQTGK AI IDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVA+LVQI
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        LSE NALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

Arabidopsis top hits

e value

%identity

Alignment

AT2G07698.1 ATPase, F1 complex, alpha subunit protein

1.8e-68

86.9

Show/hide

Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHE+RRV+VKAPGI+ERKSVHEPMQTGLKAVDSLVP+GRGQREL+I +RQTGK  I IDTILNQKQ+NSRATSESET+YCVYVAIGQKRSTV +L+Q 
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        L E NALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

ATCG00120.1 ATP synthase subunit alpha

9.5e-38

55.56

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +S  E R ++  APGII R+SV+EP+QTGL A+DS++P+GRGQRELII +RQTGK A+  DTILNQ+  N         + CVYVAIGQK S+VA++V  
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMH
        L E  A+EY+I+VA TA  PA LQ+LAPY+G A+ EYF     H
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMH

ATMG01190.1 ATP synthase subunit 1

2.3e-68

86.9

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Query:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI
        +SDHE+RRV+VKAPGI+ERKSVHEPMQTGLKAVDSLVP+GRGQREL+I  RQTGK  I IDTILNQKQ+NSRATSESET+YCVYVAIGQKRSTV +L+Q 
Subjt:  MSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQI

Query:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
        L E NALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA
Subjt:  LSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGGGTGGCTACCCTGAGGTACTATCTTATTATGAGCGATCACGAGCGAAGACGTGTCAAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCAGTGCACGAGCCTAT
GCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTGTAGGCCGTGGCCAACGAGAACTTATAATCAGAAACCGACAAACTGGAAAAATAGCTATAACTATCGATACCA
TATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCAAAATTAGTTCAA
ATTCTTTCAGAAGGGAATGCTTTGGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTTCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGA
ATATTTCCGCGATAATGGAATGCACGCATTCTAG

mRNA sequence

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Protein sequence

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MWVATLRYYLIMSDHERRRVKVKAPGIIERKSVHEPMQTGLKAVDSLVPVGRGQRELIIRNRQTGKIAITIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAKLVQ
ILSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHAF

Clc08G00600 (gene) of Watermelon (cordophanus) v2 genome