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Clc08G00650 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00650
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionElongation factor 1-gamma
Genome locationClcChr08:1183289..1184143
RNA-Seq ExpressionClc08G00650
SyntenyClc08G00650
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037155.1 hypothetical protein SDJN02_00777, partial [Cucurbita argyrosperma subsp. argyrosperma]8.4e-3279.25Show/hide
Query:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEV
        M  S+SS SLQFL FL     HS SVLA DHSS KD GKTKK DA +SPS GIK++IICLGVVT IAFSVILFK+WQKKKREEQHARLLKLFEDDDELEV
Subjt:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEV

Query:  ELGLRD
        ELGLRD
Subjt:  ELGLRD

KGN52701.1 hypothetical protein Csa_009261 [Cucumis sativus]1.7e-4088.79Show/hide
Query:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
        M GSQSSRSLQFLFF+ SF F+HS SVLA ++SS KDGGKTKKDDARRSPSMGIKI+IICLGVVTVI FSVILFKIWQKKKREEQHARLLKLFEDDDELE
Subjt:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

XP_008459655.1 PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo]3.4e-4190.65Show/hide
Query:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
        M GSQSSRSLQFLFFL +F F HS SVLAND+SS KDGGKTKKDD RRSPSMGIKI+IICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
Subjt:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

XP_023525282.1 uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo]8.4e-3279.25Show/hide
Query:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEV
        M  S+SS SLQFL FL     HS SVLA DHSS KD GKTKK DA +SPS GIK++IICLGVVT IAFSVILFK+WQKKKREEQHARLLKLFEDDDELEV
Subjt:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEV

Query:  ELGLRD
        ELGLRD
Subjt:  ELGLRD

XP_038890666.1 uncharacterized protein LOC120080166 [Benincasa hispida]3.4e-4190.57Show/hide
Query:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEV
        M GSQSSRSLQFLFF+   F HS SVLANDHSS KDGGK+KKDDARRSPSM IKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEV
Subjt:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEV

Query:  ELGLRD
        ELGLRD
Subjt:  ELGLRD

TrEMBL top hitse value%identityAlignment
A0A0A0KXZ0 Uncharacterized protein8.2e-4188.79Show/hide
Query:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
        M GSQSSRSLQFLFF+ SF F+HS SVLA ++SS KDGGKTKKDDARRSPSMGIKI+IICLGVVTVI FSVILFKIWQKKKREEQHARLLKLFEDDDELE
Subjt:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

A0A1S3CA76 uncharacterized protein LOC1034987101.7e-4190.65Show/hide
Query:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
        M GSQSSRSLQFLFFL +F F HS SVLAND+SS KDGGKTKKDD RRSPSMGIKI+IICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
Subjt:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

A0A5A7TC90 Uncharacterized protein1.7e-4190.65Show/hide
Query:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
        M GSQSSRSLQFLFFL +F F HS SVLAND+SS KDGGKTKKDD RRSPSMGIKI+IICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
Subjt:  MYGSQSSRSLQFLFFL-SFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        VELGLRD
Subjt:  VELGLRD

A0A6J1EBZ0 uncharacterized protein LOC1114326784.5e-3176.64Show/hide
Query:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDG-GKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
        M  SQSSRSLQFL FL     HS SVLA++HSS ++G GK KK D  RS SMGIKI++ICLGVVTVIAFSVIL KIWQ+KKREEQHARLLKLFEDDDELE
Subjt:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDG-GKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        +ELGLRD
Subjt:  VELGLRD

A0A6J1ICT0 uncharacterized protein LOC1114726071.3e-3075.7Show/hide
Query:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDG-GKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE
        M  SQSSRSLQFL FL     HS SVLA++HSS + G GK KK D  RS SMGIKI++ICLGVVTV+AFSVIL KIWQ+KKREEQHARLLKLFEDDDELE
Subjt:  MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDG-GKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELE

Query:  VELGLRD
        +ELGLRD
Subjt:  VELGLRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09645.1 unknown protein9.0e-1651.04Show/hide
Query:  QFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
        + LFF S      F  L+ D  +   G KT+   +  S   G K+I++ +G V V  FS  L+K+WQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Subjt:  QFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD

AT1G57765.1 unknown protein6.9e-1652.94Show/hide
Query:  HSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
        H F  ++ D +S   G K +   +  S   G K+I I LG   V   S  L+K+WQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Subjt:  HSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD

AT1G57765.2 unknown protein1.5e-1550Show/hide
Query:  FFLSFFFNHS-FSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
        FFL+  +  S +  ++ D +S   G K +   +  S   G K+I I LG   V   S  L+K+WQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Subjt:  FFLSFFFNHS-FSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD

AT3G53490.1 unknown protein5.3e-0840.54Show/hide
Query:  SGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD
        S K+ G T+K++ +     GI ++I+ L +  V    ++ +K W+KKKR+++ AR LKLFED D++E ELGL +
Subjt:  SGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCCTTTCTTTTTTCTTTAACCATTCTTTTTCAGTGTTGGCAAATGACCATTCAAGTGGTAAAGATGG
TGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCAATGGGGATCAAGATAATAATCATATGTCTAGGAGTTGTGACTGTCATTGCCTTTTCTGTGATTCTATTCA
AGATATGGCAAAAGAAGAAGAGAGAGGAACAACATGCCCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACGGATCTCAAAGCTCCAGATCTCTGCAATTCCTCTTCTTCCTTTCTTTTTTCTTTAACCATTCTTTTTCAGTGTTGGCAAATGACCATTCAAGTGGTAAAGATGG
TGGTAAAACTAAAAAGGACGATGCTCGGAGGAGCCCGTCAATGGGGATCAAGATAATAATCATATGTCTAGGAGTTGTGACTGTCATTGCCTTTTCTGTGATTCTATTCA
AGATATGGCAAAAGAAGAAGAGAGAGGAACAACATGCCCGTCTTCTCAAGCTGTTTGAAGATGATGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA
Protein sequenceShow/hide protein sequence
MYGSQSSRSLQFLFFLSFFFNHSFSVLANDHSSGKDGGKTKKDDARRSPSMGIKIIIICLGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD