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Clc08G00720 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00720
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr08:1292352..1293911
RNA-Seq ExpressionClc08G00720
SyntenyClc08G00720
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4262.88Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+LRTYK + G+LYWK MK DV+KY EECM CQ+NK+ + +P  LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG
        LSKYAHF+TL H YTAK VAE+F++EVVR +G
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG

KAA0051400.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]1.8e-4261.36Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+L+TYK + G+LYWK MK DV+KY EECM CQ+NK+ + +PT LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG
        LSKYAHF+TL H YTAK VAE+F++E+V+ +G
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4262.88Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+LRTYK + G+LYWK MK DV+KY EECM CQ+NK+ + +P  LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG
        LSKYAHF+TL H YTAK VAE+F++EVVR +G
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4262.88Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+LRTYK + G+LYWK MK DV+KY EECM CQ+NK+ + +P  LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG
        LSKYAHF+TL H YTAK VAE+F++EVVR +G
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG

TYK23171.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-4259.03Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+LRTYK + G+LYW  MK+D+KKY EECM CQ+NKT + +PT LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYGDCVKKEYDFPPS
        LSKYAHF+TL H YTAK V E+F++EVV        K +D+P S
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYGDCVKKEYDFPPS

TrEMBL top hitse value%identityAlignment
A0A5A7U2S1 Ty3/gypsy retrotransposon protein8.7e-4362.88Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+LRTYK + G+LYWK MK DV+KY EECM CQ+NK+ + +P  LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG
        LSKYAHF+TL H YTAK VAE+F++EVVR +G
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG

A0A5A7U8A5 Putative retroelement pol polyprotein8.7e-4361.36Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+L+TYK + G+LYWK MK DV+KY EECM CQ+NK+ + +PT LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG
        LSKYAHF+TL H YTAK VAE+F++E+V+ +G
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG

A0A5D3CXB1 Ty3/gypsy retrotransposon protein8.7e-4362.88Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+LRTYK + G+LYWK MK DV+KY EECM CQ+NK+ + +P  LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG
        LSKYAHF+TL H YTAK VAE+F++EVVR +G
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG

A0A5D3DHM2 Ty3/gypsy retrotransposon protein6.7e-4359.03Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+LRTYK + G+LYW  MK+D+KKY EECM CQ+NKT + +PT LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYGDCVKKEYDFPPS
        LSKYAHF+TL H YTAK V E+F++EVV        K +D+P S
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYGDCVKKEYDFPPS

A0A5D3DI73 Ty3/gypsy retrotransposon protein8.7e-4362.88Show/hide
Query:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR
        +IP IMHT+HD V GGHSG+LRTYK + G+LYWK MK DV+KY EECM CQ+NK+ + +P  LL P  I + +W D++MDF+EGLPK+ G++ I VVVDR
Subjt:  MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDR

Query:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG
        LSKYAHF+TL H YTAK VAE+F++EVVR +G
Subjt:  LSKYAHFVTLSHLYTAKQVAEIFIQEVVRHYG

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.7e-1734.88Show/hide
Query:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY
        I+  +H+     H G       ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP P  E+ W+ L+MDF+  LP++ GY+++ VVVDR SK 
Subjt:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY

Query:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD
        A  V  +   TA+Q A +F Q V+ ++G+
Subjt:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD

P0CT35 Transposon Tf2-2 polyprotein2.7e-1734.88Show/hide
Query:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY
        I+  +H+     H G       ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP P  E+ W+ L+MDF+  LP++ GY+++ VVVDR SK 
Subjt:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY

Query:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD
        A  V  +   TA+Q A +F Q V+ ++G+
Subjt:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD

P0CT36 Transposon Tf2-3 polyprotein2.7e-1734.88Show/hide
Query:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY
        I+  +H+     H G       ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP P  E+ W+ L+MDF+  LP++ GY+++ VVVDR SK 
Subjt:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY

Query:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD
        A  V  +   TA+Q A +F Q V+ ++G+
Subjt:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD

P0CT41 Transposon Tf2-12 polyprotein2.7e-1734.88Show/hide
Query:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY
        I+  +H+     H G       ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP P  E+ W+ L+MDF+  LP++ GY+++ VVVDR SK 
Subjt:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY

Query:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD
        A  V  +   TA+Q A +F Q V+ ++G+
Subjt:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD

Q9UR07 Transposon Tf2-11 polyprotein2.7e-1734.88Show/hide
Query:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY
        I+  +H+     H G       ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP P  E+ W+ L+MDF+  LP++ GY+++ VVVDR SK 
Subjt:  IMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKY

Query:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD
        A  V  +   TA+Q A +F Q V+ ++G+
Subjt:  AHFVTLSHLYTAKQVAEIFIQEVVRHYGD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCCTGCCATAATGCATACGTTCCATGACTTAGTCACTGGCGGGCATTCGGGATATCTACGAACATATAAACACTTGATAGGGAAGTTGTATTGGAAACAAATGAA
GGCTGATGTCAAGAAATATGTGGAAGAATGTATGGCGTGCCAACAGAATAAGACAGATTCTCCCACTCCCACCAGACTTCTGCAACCTTCACCTATTCTTGAGCAAGTAT
GGGATGATTTAACCATGGATTTTGTAGAAGGGTTACCGAAGGCAAGAGGATATGACTCGATTACGGTAGTGGTTGATCGACTAAGCAAGTATGCTCATTTCGTTACTTTG
TCTCATTTGTATACTGCAAAGCAAGTGGCTGAGATTTTCATCCAAGAAGTTGTGCGACATTATGGGGACTGTGTTAAAAAGGAGTACGACTTTCCACCCTCACACGGATG
GCAATCGTTGCTTGGAAACCTACGTAAGGAGAGAAGGATAATGGAAGGAGAATGGGAAGCGGTGAGGCCGTTGGGACCACCTGGGGCCCATGAGGTGGGTTTAAGAAAGG
GGTTTACTGTGAGGAGGGGGCATCTTGCTTTTGATGAATTTTTGAAGCTGAAGGCTAAAGAAGGTGGAGAGAATTCCAGCTCTCTCTCGAATGTGCTGGGGATTGTTCTT
ATTTTGAGTCCTTTGTTTATTTTATTGCTTTCCTTGAGATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCCCTGCCATAATGCATACGTTCCATGACTTAGTCACTGGCGGGCATTCGGGATATCTACGAACATATAAACACTTGATAGGGAAGTTGTATTGGAAACAAATGAA
GGCTGATGTCAAGAAATATGTGGAAGAATGTATGGCGTGCCAACAGAATAAGACAGATTCTCCCACTCCCACCAGACTTCTGCAACCTTCACCTATTCTTGAGCAAGTAT
GGGATGATTTAACCATGGATTTTGTAGAAGGGTTACCGAAGGCAAGAGGATATGACTCGATTACGGTAGTGGTTGATCGACTAAGCAAGTATGCTCATTTCGTTACTTTG
TCTCATTTGTATACTGCAAAGCAAGTGGCTGAGATTTTCATCCAAGAAGTTGTGCGACATTATGGGGACTGTGTTAAAAAGGAGTACGACTTTCCACCCTCACACGGATG
GCAATCGTTGCTTGGAAACCTACGTAAGGAGAGAAGGATAATGGAAGGAGAATGGGAAGCGGTGAGGCCGTTGGGACCACCTGGGGCCCATGAGGTGGGTTTAAGAAAGG
GGTTTACTGTGAGGAGGGGGCATCTTGCTTTTGATGAATTTTTGAAGCTGAAGGCTAAAGAAGGTGGAGAGAATTCCAGCTCTCTCTCGAATGTGCTGGGGATTGTTCTT
ATTTTGAGTCCTTTGTTTATTTTATTGCTTTCCTTGAGATTGTAG
Protein sequenceShow/hide protein sequence
MIPAIMHTFHDLVTGGHSGYLRTYKHLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTRLLQPSPILEQVWDDLTMDFVEGLPKARGYDSITVVVDRLSKYAHFVTL
SHLYTAKQVAEIFIQEVVRHYGDCVKKEYDFPPSHGWQSLLGNLRKERRIMEGEWEAVRPLGPPGAHEVGLRKGFTVRRGHLAFDEFLKLKAKEGGENSSSLSNVLGIVL
ILSPLFILLLSLRL