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Clc08G00890 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G00890
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionBED-type domain-containing protein
Genome locationClcChr08:1511628..1516146
RNA-Seq ExpressionClc08G00890
SyntenyClc08G00890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031736734.1 uncharacterized protein LOC116402076 [Cucumis sativus]3.1e-1152.05Show/hide
Query:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        +NR  K KQ+++   Y KE R+ TIQ I  W Y  G+PLN    +SF  M+E + QFGPGL PPSYHE RV C
Subjt:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
XP_031739008.1 uncharacterized protein LOC116402801 [Cucumis sativus]3.1e-1152.05Show/hide
Query:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        +NR  K KQ+++   Y KE R+ TIQ I  W Y  G+PLN    +SF  M+E + QFGPGL PPSYHE RV C
Subjt:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
XP_031741274.1 uncharacterized protein LOC116403810 [Cucumis sativus]3.1e-1152.05Show/hide
Query:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        +NR  K KQ+++   Y KE R+ TIQ I  W Y  G+PLN    +SF  M+E + QFGPGL PPSYHE RV C
Subjt:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
XP_031741325.1 uncharacterized protein LOC116403834 [Cucumis sativus]3.1e-1152.05Show/hide
Query:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        +NR  K KQ+++   Y KE R+ TIQ I  W Y  G+PLN    +SF  M+E + QFGPGL PPSYHE RV C
Subjt:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
XP_031745317.1 uncharacterized protein LOC116405444 [Cucumis sativus]3.1e-1152.05Show/hide
Query:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        +NR  K KQ+++   Y KE R+ TIQ I  W Y  G+PLN    +SF  M+E + QFGPGL PPSYHE RV C
Subjt:  RNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
TrEMBL top hitse value%identityAlignment
A0A5A7SSR3 BED-type domain-containing protein2.8e-1049.35Show/hide
Query:  VVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        VV +R    K KQ+++   Y KE R+ TIQ I  W Y  G+PLN     SF  M+E + QFGPGL PP+YHE RV+C
Subjt:  VVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
A0A5A7TY62 BED-type domain-containing protein8.3e-1049.35Show/hide
Query:  VVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        VV +R    K KQ+++   Y KE R+ TIQ I  W Y  G+PLN     SF  M+E + QFGPGL PP+YHE RV C
Subjt:  VVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
A0A5A7VBF9 BED-type domain-containing protein2.8e-1046.15Show/hide
Query:  KVVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        ++V    +  K KQ+++   Y KE R+ TIQ I  W Y  G+PLN     SF  M+E + QFGPGL PP+YHE RV C
Subjt:  KVVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
A0A5D3BV42 BED-type domain-containing protein8.3e-1049.35Show/hide
Query:  VVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        VV +R    K KQ+++   Y KE R+ TIQ I  W Y  G+PLN     SF  M+E + QFGPGL PP+YHE RV C
Subjt:  VVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
A0A5D3DXN3 BED-type domain-containing protein8.3e-1049.35Show/hide
Query:  VVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
        VV +R    K KQ+++   Y KE R+ TIQ I  W Y  G+PLN     SF  M+E + QFGPGL PP+YHE RV C
Subjt:  VVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43260.1 hAT transposon superfamily protein2.5e-0646.67Show/hide
Query:  QFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEAR
        Q++  W+Y  GIP N I       MLEV  QFGPG+ PPS ++ R
Subjt:  QFIMPWIYQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEAR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCGCCACACCCTTTTCTGGTCCGAGAGGGGTTCAATTATAGAGGAATCAGTGGTACTTAAGGAGTTAAATGTAACTACAGGGACAAGCAAGCGAAGACCTTGGAT
GGTGACAACCCACCAGCAGCGGTGTTCAGGTGATGGAGGCAGACAGCGTGCGACATTGGCGGCGGCGAGCAGGTGTGCGACGACGGTAGCTACGAGTAGGTCTGCAACGG
CGGCAGTGACGAACAGGTGTGCGACGACGGCAGCGGACGTCCCTAGAGGTGGTAGCGTCTGTAACCCCAAGCGTGTTCCTCAAGCGAGCGCCCAGGGGCTTATGCGCCTC
GTGTGTGCATGGGGTGAACAAGTTCAATCAAGTGCTTCCTCCTGTGCGCCTTTGCTCAGGATGGGAGAAGGAGATAAAAAACGCAAACATCCTGGTTGGCAATATGTCAT
CTTAGAAAATGAAAAGGATACGAACACTTGCAAGTACTATGGTGCTTATGATTTGAATATTATTGATGAAGAAGAGATGGAGGATGAGATGGAAGTTGGTGAATCAACCA
AGGTTGTTGATGATCGGAATAGATTAAAGAAGTTGAAGCAATCAACCATTGCCGAGAAATACAACAAAGAAGGGAGAGATGCTACTATTCAATTTATCATGCCTTGGATT
TATCAAGTAGGTATTCCATTAAACACAATTCAGTTAAAAAGCTTTCATATAATGCTAGAGGTTGTGGAACAATTTGGACCTGGTTTGATACCTCCTTCTTATCATGAGGC
TAGAGTGACATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCGCCACACCCTTTTCTGGTCCGAGAGGGGTTCAATTATAGAGGAATCAGTGGTACTTAAGGAGTTAAATGTAACTACAGGGACAAGCAAGCGAAGACCTTGGAT
GGTGACAACCCACCAGCAGCGGTGTTCAGGTGATGGAGGCAGACAGCGTGCGACATTGGCGGCGGCGAGCAGGTGTGCGACGACGGTAGCTACGAGTAGGTCTGCAACGG
CGGCAGTGACGAACAGGTGTGCGACGACGGCAGCGGACGTCCCTAGAGGTGGTAGCGTCTGTAACCCCAAGCGTGTTCCTCAAGCGAGCGCCCAGGGGCTTATGCGCCTC
GTGTGTGCATGGGGTGAACAAGTTCAATCAAGTGCTTCCTCCTGTGCGCCTTTGCTCAGGATGGGAGAAGGAGATAAAAAACGCAAACATCCTGGTTGGCAATATGTCAT
CTTAGAAAATGAAAAGGATACGAACACTTGCAAGTACTATGGTGCTTATGATTTGAATATTATTGATGAAGAAGAGATGGAGGATGAGATGGAAGTTGGTGAATCAACCA
AGGTTGTTGATGATCGGAATAGATTAAAGAAGTTGAAGCAATCAACCATTGCCGAGAAATACAACAAAGAAGGGAGAGATGCTACTATTCAATTTATCATGCCTTGGATT
TATCAAGTAGGTATTCCATTAAACACAATTCAGTTAAAAAGCTTTCATATAATGCTAGAGGTTGTGGAACAATTTGGACCTGGTTTGATACCTCCTTCTTATCATGAGGC
TAGAGTGACATGTTGA
Protein sequenceShow/hide protein sequence
MWRHTLFWSERGSIIEESVVLKELNVTTGTSKRRPWMVTTHQQRCSGDGGRQRATLAAASRCATTVATSRSATAAVTNRCATTAADVPRGGSVCNPKRVPQASAQGLMRL
VCAWGEQVQSSASSCAPLLRMGEGDKKRKHPGWQYVILENEKDTNTCKYYGAYDLNIIDEEEMEDEMEVGESTKVVDDRNRLKKLKQSTIAEKYNKEGRDATIQFIMPWI
YQVGIPLNTIQLKSFHIMLEVVEQFGPGLIPPSYHEARVTC