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Clc08G01095 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G01095
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box/LRR-repeat protein
Genome locationClcChr08:1761423..1762824
RNA-Seq ExpressionClc08G01095
SyntenyClc08G01095
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039267.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]2.3e-0755.36Show/hide
Query:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE
        + E F    S+++ELTFP+V+LLTPTLK VNF+NVLP ++SDSEFS + K D + +
Subjt:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE

KGN52679.1 hypothetical protein Csa_008030 [Cucumis sativus]1.1e-0960.71Show/hide
Query:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE
        + EIF    S+++ELTFP+V+LLTPTLKTVNF+N+LP ++SDSEFS +HK D + E
Subjt:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE

XP_008459617.1 PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo]2.3e-0755.36Show/hide
Query:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE
        + E F    S+++ELTFP+V+LLTPTLK VNF+NVLP ++SDSEFS + K D + +
Subjt:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE

XP_038890213.1 uncharacterized protein LOC120079853 [Benincasa hispida]4.4e-0653.23Show/hide
Query:  NVPGLSKFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE
        + P L   E+  C +S +  LTFPEV+L TP LK+VNFINVLP +KSDSEF  +HK + + E
Subjt:  NVPGLSKFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE

XP_038890214.1 F-box/LRR-repeat protein At3g26922-like [Benincasa hispida]2.7e-0870.21Show/hide
Query:  SNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE
        S  +ELTFPEV+L TPTL+TVNFINVLP VKSDSEFS +HK D + +
Subjt:  SNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE

TrEMBL top hitse value%identityAlignment
A0A0A0KSW6 F-box domain-containing protein5.8e-0464.1Show/hide
Query:  TFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFE
        TF EV+LLTPTL+ ++F+NVLPTVKSD EFS + K D +
Subjt:  TFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFE

A0A0A0KUU7 F-box domain-containing protein5.4e-1060.71Show/hide
Query:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE
        + EIF    S+++ELTFP+V+LLTPTLKTVNF+N+LP ++SDSEFS +HK D + E
Subjt:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE

A0A1S3CB41 F-box/LRR-repeat protein At3g26922-like isoform X11.1e-0755.36Show/hide
Query:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE
        + E F    S+++ELTFP+V+LLTPTLK VNF+NVLP ++SDSEFS + K D + +
Subjt:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE

A0A5A7TCF1 F-box/LRR-repeat protein1.1e-0755.36Show/hide
Query:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE
        + E F    S+++ELTFP+V+LLTPTLK VNF+NVLP ++SDSEFS + K D + +
Subjt:  KFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGGATAAAAAGGCAGATTAATTACAATGTTCCCGGGCTGTCCAAATTTGAAATTTTTGACTGCTTCTATTCTAACAACTTGGAATTAACTTTTCCGGAAGTTAA
ATTGCTTACACCAACTCTTAAAACGGTCAATTTCATCAATGTGTTGCCCACTGTCAAGTCTGATTCTGAGTTTTCTTTCCTACACAAAGATGATTTTGAGTTTGAGATTG
TGCATGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGGATAAAAAGGCAGATTAATTACAATGTTCCCGGGCTGTCCAAATTTGAAATTTTTGACTGCTTCTATTCTAACAACTTGGAATTAACTTTTCCGGAAGTTAA
ATTGCTTACACCAACTCTTAAAACGGTCAATTTCATCAATGTGTTGCCCACTGTCAAGTCTGATTCTGAGTTTTCTTTCCTACACAAAGATGATTTTGAGTTTGAGATTG
TGCATGCCTAA
Protein sequenceShow/hide protein sequence
MKGIKRQINYNVPGLSKFEIFDCFYSNNLELTFPEVKLLTPTLKTVNFINVLPTVKSDSEFSFLHKDDFEFEIVHA