CuGenDBv2

Gene ID	Clc08G01410
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Complex 1 LYR protein
Genome location	ClcChr08:2346377..2349294
RNA-Seq Expression	Clc08G01410
Synteny	Clc08G01410
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039302.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa]

4.6e-36

88.04

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNSDLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAK YRQLLKAVK HIGK E KKHFVDYVAQKFRDKSILSKPHSV+QEIKLARDYTFLLNSDLLFSYNIA+DR++EMKRILG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNSDLLFSYNIAIDRTEEMKRILGNTS

KAG7033478.1 Extradiol ring-cleavage dioxygenase, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.8e-36

88.04

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNSDLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAKVYRQLLKAVKNHIGK E KKHFVDYVAQKFR+KS LSKPHSV+Q+IKLARDYTFLLNSDLLFSYNIAIDR++EMKRILG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNSDLLFSYNIAIDRTEEMKRILGNTS

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

2.5e-34

81.44

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAKVYRQLLKAVK H+GK E KKHFVDYVAQKFRDKSILSKPHS++QEIKLARDYTFLLNS     DLLFSYNIA+DR++EMKR+LG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

5.6e-34

83.51

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAKVYRQLLKAVKNHIGK E KKHFVDYVAQKFR+KS LSKPHSV+Q+IKLARDYTFLLNS     DLLFSYNIAIDR++EMKRILG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

1.5e-34

84.54

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAKVYRQLLKAVKNHIGK E KKHFVDYVAQKFRDK+ILSKPHSV+QEIKLA DYTFLLNS     DLLFSYNIA+DR+EEMKRILG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9E2 Uncharacterized protein

1.2e-34

81.44

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAKVYRQLLKAVK H+GK E KKHFVDYVAQKFRDKSILSKPHS++QEIKLARDYTFLLNS     DLLFSYNIA+DR++EMKR+LG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS

A0A5D3BQE5 Complex1_LYR domain-containing protein

2.2e-36

88.04

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNSDLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAK YRQLLKAVK HIGK E KKHFVDYVAQKFRDKSILSKPHSV+QEIKLARDYTFLLNSDLLFSYNIA+DR++EMKRILG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNSDLLFSYNIAIDRTEEMKRILGNTS

A0A6J1C0V5 uncharacterized protein LOC111006395

5.3e-30

75.26

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS
        M+SEALQVA+VYR+LLKAVKNHIGK E KKHFVDYVAQKFR++S LS+PHS++Q+IKLA DY  LLNS     DLLFSYNIAIDR+EEMKRILG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS

A0A6J1EY92 uncharacterized protein LOC111439884

1.3e-33

82.47

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAKVYRQLLKAVK HIGK E KKHFVDYVAQKFR+KS LSKPHSV+Q+IKLARDYTFLLNS     DLLFSYNIAIDR++EMKRILG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS

A0A6J1HS51 uncharacterized protein LOC111467294

2.7e-34

83.51

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS
        MNSEALQVAKVYRQLLKAVKNHIGK E KKHFVDYVAQKFR+KS LSKPHSV+Q+IKLARDYTFLLNS     DLLFSYNIAIDR++EMKRILG ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.1e-19

51.55

Show/hide

Query:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS
        M+ E +  A+VYR LLKAV  H+GK + K HF+D+V Q+FR        ++  ++I LAR+YT+LLNS     DLLFSYNIA+DRTEEMKR+L  ++
Subjt:  MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNS-----DLLFSYNIAIDRTEEMKRILGNTS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATTCAGAAGCCTTGCAGGTAGCTAAGGTCTACCGTCAGCTTCTCAAAGCTGTAAAGAATCATATTGGAAAGGGAGAGAAGAAGAAGCATTTTGTGGACTATGTGGC
TCAAAAGTTCAGGGATAAATCCATACTTTCAAAACCCCACTCTGTTCGACAGGAAATCAAGCTTGCTCGTGATTACACATTTCTACTTAACAGCGATTTGCTGTTCTCGT
ACAACATTGCTATTGATAGAACAGAGGAAATGAAGCGAATATTGGGCAATACTTCTGAGGGTGAATTTGACAGCAATCTAATAGACAATCTCATTGAAGTACATCAGAAA
GGGTCTCTCCAGCAAAGATGCTTGGTGCTCTTCCATAGCTCGAGACACACGAGAGCGCTAATCGATAGCTTGAATACTGTGAAGAATATGAATAAGGAAGAAATGCCCAA
TTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNSEALQVAKVYRQLLKAVKNHIGKGEKKKHFVDYVAQKFRDKSILSKPHSVRQEIKLARDYTFLLNSDLLFSYNIAIDRTEEMKRILGNTSEGEFDSNLIDNLIEVHQK
GSLQQRCLVLFHSSRHTRALIDSLNTVKNMNKEEMPN

Clc08G01410 (gene) of Watermelon (cordophanus) v2 genome