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Clc08G01643 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G01643
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMyb_DNA-bind_3 domain-containing protein
Genome locationClcChr08:2875305..2876262
RNA-Seq ExpressionClc08G01643
SyntenyClc08G01643
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6468192.1 hypothetical protein ZIOFF_072763 [Zingiber officinale]1.4e-0529.11Show/hide
Query:  DIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMN----ETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSSPINSI-----DMHK
        D HP A GLR K F H ++L  ++GKD   R   ETP+D   ++N    ETDT E+   + T        +      R S+   SS  + +     + ++
Subjt:  DIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMN----ETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSSPINSI-----DMHK

Query:  D--------EKEVEA--LRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAP
        +        +K++E+   + +  D+L E+ + +  + + V E +FKD +KID F A P
Subjt:  D--------EKEVEA--LRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAP

VVA26458.1 PREDICTED: At2g29880 [Prunus dulcis]6.4e-0629.66Show/hide
Query:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSSPINSIDMHK----DEKE
        V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ + +T  N  GD           G+G  +   +         ++  K     E  
Subjt:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSSPINSIDMHK----DEKE

Query:  VEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD
            R + +D+LQ++  L+  D +  A A+  D  KIDL    PD
Subjt:  VEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]1.7e-0628.89Show/hide
Query:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNET--------------------DTRENILGDETPTIPTSRINGVGSFSRGSKRK
        V  HPNAKGLR K   H+++L V FGKDR     ++ P DM      T                    +T E+ + ++ P  PTS+   +G+ S GSKRK
Subjt:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNET--------------------DTRENILGDETPTIPTSRINGVGSFSRGSKRK

Query:  ------------------QSSPINSIDMHKDEKEVEALRRQAL--DKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAP
                          Q++ +  +    D+KE + + R+ +  D+L+++ +L +ND V++   L  +V K   FL  P
Subjt:  ------------------QSSPINSIDMHKDEKEVEALRRQAL--DKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAP

XP_038877524.1 uncharacterized protein LOC120069782 [Benincasa hispida]4.9e-0635.29Show/hide
Query:  DIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE-----------TDTRENI----------LGDETPTIPTSRINGVGSFSRGSKRK
        D HPNAKGL+ K F++++EL+++FGKDR   EG ETP D     +E            + +E+I          + +  P  P SR  G  +  RG+KRK
Subjt:  DIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE-----------TDTRENI----------LGDETPTIPTSRINGVGSFSRGSKRK

Query:  QS
        ++
Subjt:  QS

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]3.1e-0829.49Show/hide
Query:  HPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSS-PINSIDMHKDEKEVEALR-
        HPNAKG+ +K F H+++L+ +FGKDR       TP        E+   ++ + +E     T R +     SRGSKRK+SS  +  ID+ K   E+++   
Subjt:  HPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSS-PINSIDMHKDEKEVEALR-

Query:  ---------------RQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPDY
                       ++ ++ +  + DL  ND+V + + +  D+ K D FLA P++
Subjt:  ---------------RQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPDY

TrEMBL top hitse value%identityAlignment
A0A2P6PRT6 Uncharacterized protein5.8e-0528.14Show/hide
Query:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE----TDTRENILGDETPTIPTSRINGVGSFSRGSKRKQ----------SSPIN
        V +H +AKGLR K F+H++ L   FG+DR    G E P +   D+N      D  EN L + T     +R +     +R  KR +          +S + 
Subjt:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE----TDTRENILGDETPTIPTSRINGVGSFSRGSKRKQ----------SSPIN

Query:  S-IDMHK-----------DEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD
        S +D+ K           +E      R + +++L ++  +N  D ++ A A+  D  KIDL  + PD
Subjt:  S-IDMHK-----------DEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD

A0A2P6PUC3 Putative Myb/SANT-like domain-containing protein5.8e-0528.14Show/hide
Query:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE----TDTRENILGDETPTIPTSRINGVGSFSRGSKRKQ----------SSPIN
        V +H +AKGLR K F+H++ L   FG+DR    G E P +   D+N      D  EN L + T     +R +     +R  KR +          +S + 
Subjt:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNE----TDTRENILGDETPTIPTSRINGVGSFSRGSKRKQ----------SSPIN

Query:  S-IDMHK-----------DEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD
        S +D+ K           +E      R + +++L ++  +N  D ++ A A+  D  KIDL  + PD
Subjt:  S-IDMHK-----------DEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD

A0A2P6QKN4 Putative Myb/SANT-like domain-containing protein7.6e-0526.19Show/hide
Query:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETP--TIPTSRINGVGSFSRGSKRKQ-------------SSPI
        V +H  AKGLR K F+H++ L   FG+DR    G E P +   D+N  +   ++ GD  P   +PT       S S  ++ ++             +S +
Subjt:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETP--TIPTSRINGVGSFSRGSKRKQ-------------SSPI

Query:  NS-IDMHKDEKE-----------VEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD
         S +D+ K   E               R + +++L ++  LN  D ++ A  +  D  KI+L  + PD
Subjt:  NS-IDMHKDEKE-----------VEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD

A0A5E4FL81 PREDICTED: At2g298803.1e-0629.66Show/hide
Query:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSSPINSIDMHK----DEKE
        V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ + +T  N  GD           G+G  +   +         ++  K     E  
Subjt:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSSPINSIDMHK----DEKE

Query:  VEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD
            R + +D+LQ++  L+  D +  A A+  D  KIDL    PD
Subjt:  VEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD

A0A6P5U2X6 uncharacterized protein At2g29880-like1.2e-0529.76Show/hide
Query:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTI----PTSRINGVGSFSRGSKRKQ-----------SSPI
        V +H +AKGLR K F H++ L  +FGKDR   +G E P ++  D+ +  T  N  GD    I    PT++       +R +KR +           +S +
Subjt:  VDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTI----PTSRINGVGSFSRGSKRKQ-----------SSPI

Query:  NS-IDMHK-----------DEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD
         S +D+ K            E      R + +D+LQ++  L+  D +  A A+  D  KIDL    PD
Subjt:  NS-IDMHK-----------DEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTAGATATTCACCCTAATGCAAAAGGGTTACGAAGGAAAGTCTTCGTCCATTTTGAGGAGCTAGCAGTAATATTTGGAAAAGATCGGACTATCAGAGAAGGTGT
GGAGACACCTACTGATATGACATTCGATATGAATGAGACAGATACTCGGGAAAATATATTGGGGGATGAGACACCAACCATACCTACGAGTAGGATCAATGGAGTAGGAT
CATTCTCTAGAGGGAGTAAGAGGAAGCAATCTAGCCCAATAAATTCTATTGATATGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTT
CAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAAAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCAGATTATAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTAGATATTCACCCTAATGCAAAAGGGTTACGAAGGAAAGTCTTCGTCCATTTTGAGGAGCTAGCAGTAATATTTGGAAAAGATCGGACTATCAGAGAAGGTGT
GGAGACACCTACTGATATGACATTCGATATGAATGAGACAGATACTCGGGAAAATATATTGGGGGATGAGACACCAACCATACCTACGAGTAGGATCAATGGAGTAGGAT
CATTCTCTAGAGGGAGTAAGAGGAAGCAATCTAGCCCAATAAATTCTATTGATATGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTT
CAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAAAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCAGATTATAATTGA
Protein sequenceShow/hide protein sequence
MDVDIHPNAKGLRRKVFVHFEELAVIFGKDRTIREGVETPTDMTFDMNETDTRENILGDETPTIPTSRINGVGSFSRGSKRKQSSPINSIDMHKDEKEVEALRRQALDKL
QEMHDLNSNDRVKVAEALFKDVYKIDLFLAAPDYN