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Clc08G01647 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G01647
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr08:2884541..2890467
RNA-Seq ExpressionClc08G01647
SyntenyClc08G01647
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062571.1 retrotransposon protein [Cucumis melo var. makuwa]6.4e-2353.45Show/hide
Query:  ESAVKFELHLGANLN-LIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVL
        E  +K  + +  N N   ++ +E+D NCLGALD TYIKVNV  TDRP +RTRK EIATNVLGVC   G+F+YV   WE SAA+SR+LRDA+SR N L V 
Subjt:  ESAVKFELHLGANLN-LIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVL

Query:  K--CHTPSQITLHDLR
        K   H   +  +H L+
Subjt:  K--CHTPSQITLHDLR

TYK19823.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.4e-2369.33Show/hide
Query:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK
        NC+GALD TYIKVNV   DRPRYRTRK E+ATN LGVC   G+F+++   WE SAANSR+LRDA+SRPN L VLK
Subjt:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK

XP_028113932.1 protein ALP1-like [Camellia sinensis]1.1e-2257.84Show/hide
Query:  HLGANLNLIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLKCHTPSQIT
        H+ +++N  Y       NCLGALD TY+KV     D+PRYRTRK EIATNVL VCS+D +FIYV P W+ SA+NSRVLRDA+SRPN L VL       IT
Subjt:  HLGANLNLIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLKCHTPSQIT

Query:  LH
         H
Subjt:  LH

XP_038875111.1 uncharacterized protein LOC120067643 [Benincasa hispida]1.9e-2274.67Show/hide
Query:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK
        NCLGALDDTYIKVNV   DR  YRTRK EIATNVL +CS   EFI+V PRWE S ANSRVLRDAISRP+ L V K
Subjt:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK

XP_038880502.1 uncharacterized protein LOC120072165 [Benincasa hispida]1.7e-2364.13Show/hide
Query:  HLGANLNLIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK
        H  + LN++ R +E   +CLGALD TYIKVNV  TDRPRYR RK EI TNVLGV   +G+F++V P WEDS A+SRVL DAISRPN L VLK
Subjt:  HLGANLNLIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK

TrEMBL top hitse value%identityAlignment
A0A5A7TNY6 Retrotransposon protein2.0e-2270.67Show/hide
Query:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK
        NCLGALD TYIKVNV  +DR RYRTRK E+ATNVLGVC + G+F+YV   WE SAA+SR+LRDA+SRPN+L V K
Subjt:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK

A0A5A7VA89 Retrotransposon protein3.1e-2353.45Show/hide
Query:  ESAVKFELHLGANLN-LIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVL
        E  +K  + +  N N   ++ +E+D NCLGALD TYIKVNV  TDRP +RTRK EIATNVLGVC   G+F+YV   WE SAA+SR+LRDA+SR N L V 
Subjt:  ESAVKFELHLGANLN-LIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVL

Query:  K--CHTPSQITLHDLR
        K   H   +  +H L+
Subjt:  K--CHTPSQITLHDLR

A0A5D3CKE3 Retrotransposon protein2.6e-2273.33Show/hide
Query:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK
        NCLGALD TYIKVNV V+DR RYRTRK E+ATNVLGVC   G+FIYV   WE SAA+SR+LRDA+SRPN L V K
Subjt:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK

A0A5D3D8H4 Putative nuclease HARBI14.1e-2369.33Show/hide
Query:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK
        NC+GALD TYIKVNV   DRPRYRTRK E+ATN LGVC   G+F+++   WE SAANSR+LRDA+SRPN L VLK
Subjt:  NCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVLK

A0A6P4AQT8 uncharacterized protein LOC1074340131.5e-2269.62Show/hide
Query:  QYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNV
        +++I  NCLGALD TYIKVNV   D+PRYRTRK EIATNVLGVC+ + EFI+V P WE SA++SRVLRDA+SRPN L V
Subjt:  QYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28950.1 unknown protein8.4e-1344.59Show/hide
Query:  RQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISR
        R Y    +C+GA+DDT+I   V     P +R RK +I+ N+L  C+ D EF+YV   WE SA +S+VL DA++R
Subjt:  RQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGTTCAATTTTCAAAGCCTACCAAAGAAAGTGCGGTTAAGTTTGAATTGCATTTGGGTGCCAATCTCAACTTAATTTATAGACAGTACGAAATAGATACGAA
CTGTTTAGGGGCATTGGATGACACCTACATTAAAGTGAATGTAGGTGTTACAGATCGCCCAAGGTATAGGACAAGAAAATGTGAGATAGCAACCAATGTGCTAGGGGTAT
GCTCTAAAGATGGAGAGTTTATCTATGTCCACCCTAGGTGGGAAGATTCTGCAGCTAATTCTAGAGTTTTAAGGGATGCAATCTCAAGGCCCAATGACTTGAATGTTCTT
AAGTGTCACACCCCCTCCCAGATTACACTTCATGACCTGAGAGGAGATGTGAGAACAACAAACATCACCCCTTTAGCTGACGATAATCGATACGAGGCAGTGGGTACTTA
TTACATATTGTTACCTTATTTAGCTAACGGTAATCAATACATAACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGTTCAATTTTCAAAGCCTACCAAAGAAAGTGCGGTTAAGTTTGAATTGCATTTGGGTGCCAATCTCAACTTAATTTATAGACAGTACGAAATAGATACGAA
CTGTTTAGGGGCATTGGATGACACCTACATTAAAGTGAATGTAGGTGTTACAGATCGCCCAAGGTATAGGACAAGAAAATGTGAGATAGCAACCAATGTGCTAGGGGTAT
GCTCTAAAGATGGAGAGTTTATCTATGTCCACCCTAGGTGGGAAGATTCTGCAGCTAATTCTAGAGTTTTAAGGGATGCAATCTCAAGGCCCAATGACTTGAATGTTCTT
AAGTGTCACACCCCCTCCCAGATTACACTTCATGACCTGAGAGGAGATGTGAGAACAACAAACATCACCCCTTTAGCTGACGATAATCGATACGAGGCAGTGGGTACTTA
TTACATATTGTTACCTTATTTAGCTAACGGTAATCAATACATAACCTAA
Protein sequenceShow/hide protein sequence
MADVQFSKPTKESAVKFELHLGANLNLIYRQYEIDTNCLGALDDTYIKVNVGVTDRPRYRTRKCEIATNVLGVCSKDGEFIYVHPRWEDSAANSRVLRDAISRPNDLNVL
KCHTPSQITLHDLRGDVRTTNITPLADDNRYEAVGTYYILLPYLANGNQYIT