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Clc08G01880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G01880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionethylene-responsive transcription factor ERF022-like
Genome locationClcChr08:3609884..3610521
RNA-Seq ExpressionClc08G01880
SyntenyClc08G01880
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001471 - AP2/ERF domain
IPR016177 - DNA-binding domain superfamily
IPR036955 - AP2/ERF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592285.1 Ethylene-responsive transcription factor TINY, partial [Cucurbita argyrosperma subsp. sororia]1.8e-5983.23Show/hide
Query:  QAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQ
        Q   RRL  N SVS  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAA FLRGTSA+LNFPDSV SLPQPESCSREHIQSAAAKAAAQ
Subjt:  QAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQ

Query:  MREMETEERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF
        MREME  ER+ S+G S T FE++KEAPLLSPLRL  LGFGPASD ED LLLP YF
Subjt:  MREMETEERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF

XP_004141611.1 ethylene-responsive transcription factor ERF022 [Cucumis sativus]2.2e-6079.75Show/hide
Query:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA
        MTQAQ R L  + S++K FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSA+LNFPDSVSSLPQPESCSREHIQ AAAKAA
Subjt:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA

Query:  AQMREMET-----EERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF
        AQ+R MET     +++ T SGWS T FEQVKE PLLSPLRLGLLGFGPA +E+   LLLP YF
Subjt:  AQMREMET-----EERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF

XP_008459710.1 PREDICTED: ethylene-responsive transcription factor ERF022-like [Cucumis melo]6.3e-6080.12Show/hide
Query:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA
        MTQAQ + LR N S++K FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRG SAVLNFPDSVSSLPQPESCSREHIQ AAAKAA
Subjt:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA

Query:  AQMREMETE---ERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF
        AQ+R    E   ++ T SGWS T FEQVKE PLLSPLRLGLLGFGPA +E+  +LLLP YF
Subjt:  AQMREMETE---ERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF

XP_023536389.1 ethylene-responsive transcription factor ERF022-like [Cucurbita pepo subsp. pepo]2.4e-5983.23Show/hide
Query:  QAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQ
        Q   RRL  N SVS  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAA FLRGTSA+LNFPDSV SLPQPESCSREHIQSAAAKAAAQ
Subjt:  QAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQ

Query:  MREMETEERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF
        MREME  ER  S+G S T FE++KEAPLLSPLRL  LGFGPASD ED LLLP YF
Subjt:  MREMETEERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF

XP_038889152.1 ethylene-responsive transcription factor ERF022-like [Benincasa hispida]2.0e-6689.24Show/hide
Query:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA
        MTQAQ RRL  NDS+SK FRGVRKRSWGRYVSEIRLPGKK RVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSV SLPQPESCSREHIQSAAAKAA
Subjt:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA

Query:  AQMREMETEERETSSG-WSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF
        AQMR+ME  E+ TSSG WSP TFEQVKEAPLLSPLRLGLLGFGP SD EDTLLL AYF
Subjt:  AQMREMETEERETSSG-WSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF

TrEMBL top hitse value%identityAlignment
A0A0A0KSQ8 AP2/ERF domain-containing protein1.1e-6079.75Show/hide
Query:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA
        MTQAQ R L  + S++K FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSA+LNFPDSVSSLPQPESCSREHIQ AAAKAA
Subjt:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA

Query:  AQMREMET-----EERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF
        AQ+R MET     +++ T SGWS T FEQVKE PLLSPLRLGLLGFGPA +E+   LLLP YF
Subjt:  AQMREMET-----EERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF

A0A1S3CAB8 ethylene-responsive transcription factor ERF022-like3.1e-6080.12Show/hide
Query:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA
        MTQAQ + LR N S++K FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRG SAVLNFPDSVSSLPQPESCSREHIQ AAAKAA
Subjt:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA

Query:  AQMREMETE---ERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF
        AQ+R    E   ++ T SGWS T FEQVKE PLLSPLRLGLLGFGPA +E+  +LLLP YF
Subjt:  AQMREMETE---ERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF

A0A5D3BN59 Ethylene-responsive transcription factor ERF022-like protein3.1e-6080.12Show/hide
Query:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA
        MTQAQ + LR N S++K FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRG SAVLNFPDSVSSLPQPESCSREHIQ AAAKAA
Subjt:  MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA

Query:  AQMREMETE---ERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF
        AQ+R    E   ++ T SGWS T FEQVKE PLLSPLRLGLLGFGPA +E+  +LLLP YF
Subjt:  AQMREMETE---ERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDED--TLLLPAYF

A0A6J1EQQ6 ethylene-responsive transcription factor ERF022-like1.2e-5982.58Show/hide
Query:  QAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQ
        Q   RRL  N SVS  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAA FLRGTSA+LNFPDS+ SLPQPESCSREHIQSAAAKAAAQ
Subjt:  QAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQ

Query:  MREMETEERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF
        MREME  ER+ S+G S T FE++KEAPLLSPLRL  LGFGPASD ED LLLP YF
Subjt:  MREMETEERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF

A0A6J1I976 ethylene-responsive transcription factor ERF022-like4.6e-5678.71Show/hide
Query:  QAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQ
        Q   RRL  N S+S +FRGVRK+SWGRYVSEIRLPGKKTRVWLGSFASP+M ARAYDSAA FLRGTSA+LNFPDSV SL QPESCSREHIQSAAAKAAAQ
Subjt:  QAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQ

Query:  MREMETEERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF
        MREME  ER  S+G S T FE++KE PLLSPLRL  LG GPASD ED LLLP YF
Subjt:  MREMETEERETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASD-EDTLLLPAYF

SwissProt top hitse value%identityAlignment
O80654 Ethylene-responsive transcription factor ERF0379.3e-2261.45Show/hide
Query:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAA
        +RGVR R+WG++VSEIR P KK+R+WLG+F++PEMAARA+D+AA  ++GTSAVLNFP+  + LP+P S S   +Q+AAA AAA
Subjt:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAA

Q1ECI2 Ethylene-responsive transcription factor ERF0234.6e-2160.98Show/hide
Query:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA
        + GVRKR WG++VSEIR P KK+R+WLGSF  PEMAA+AYD AA  L+G  A LNFP+ +  LP+P +C+   IQ AAAKAA
Subjt:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA

Q39127 Ethylene-responsive transcription factor TINY2.4e-2253.45Show/hide
Query:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEERETSSGWS
        +RGVRKR+WG++VSEIR P KK+R+WLG+F SPEMAARA+D AA  ++G SA+LNFPD   S P+P S S   IQ AA KAA     MET +  +SS  S
Subjt:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEERETSSGWS

Query:  PTTFEQVKEAPLLSPL
          TF   + +  L  L
Subjt:  PTTFEQVKEAPLLSPL

Q9LQ28 Ethylene-responsive transcription factor ERF0228.9e-2549.61Show/hide
Query:  TFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMR-------EMETEE
        ++RG+R+R WG++VSEIR PGKKTR+WLGS+ + EMAA AYD+AA  LRG    LNFP+ V S P+PES S EHIQ+AA  AA   +        +E+ +
Subjt:  TFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMR-------EMETEE

Query:  RETSSGWSPTTFEQVKEAPLLSPLRLG
          +  G SP   + + E+PL SP R+G
Subjt:  RETSSGWSPTTFEQVKEAPLLSPLRLG

Q9LU18 Ethylene-responsive transcription factor ERF0363.5e-2152.43Show/hide
Query:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEERETSSGWS
        +RGVR RSWG++VSEIR P KKTR+WLG+F + +MAARA+D AA  ++G+SAVLNFP+  S  P+P S S   IQ+AAA+AAA + E +  E++ +    
Subjt:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEERETSSGWS

Query:  PTT
        P++
Subjt:  PTT

Arabidopsis top hitse value%identityAlignment
AT1G01250.1 Integrase-type DNA-binding superfamily protein3.3e-2260.98Show/hide
Query:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA
        + GVRKR WG++VSEIR P KK+R+WLGSF  PEMAA+AYD AA  L+G  A LNFP+ +  LP+P +C+   IQ AAAKAA
Subjt:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAA

AT1G33760.1 Integrase-type DNA-binding superfamily protein6.4e-2649.61Show/hide
Query:  TFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMR-------EMETEE
        ++RG+R+R WG++VSEIR PGKKTR+WLGS+ + EMAA AYD+AA  LRG    LNFP+ V S P+PES S EHIQ+AA  AA   +        +E+ +
Subjt:  TFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMR-------EMETEE

Query:  RETSSGWSPTTFEQVKEAPLLSPLRLG
          +  G SP   + + E+PL SP R+G
Subjt:  RETSSGWSPTTFEQVKEAPLLSPLRLG

AT1G77200.1 Integrase-type DNA-binding superfamily protein6.6e-2361.45Show/hide
Query:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAA
        +RGVR R+WG++VSEIR P KK+R+WLG+F++PEMAARA+D+AA  ++GTSAVLNFP+  + LP+P S S   +Q+AAA AAA
Subjt:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAA

AT3G16280.1 Integrase-type DNA-binding superfamily protein2.5e-2252.43Show/hide
Query:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEERETSSGWS
        +RGVR RSWG++VSEIR P KKTR+WLG+F + +MAARA+D AA  ++G+SAVLNFP+  S  P+P S S   IQ+AAA+AAA + E +  E++ +    
Subjt:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEERETSSGWS

Query:  PTT
        P++
Subjt:  PTT

AT5G25810.1 Integrase-type DNA-binding superfamily protein1.7e-2353.45Show/hide
Query:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEERETSSGWS
        +RGVRKR+WG++VSEIR P KK+R+WLG+F SPEMAARA+D AA  ++G SA+LNFPD   S P+P S S   IQ AA KAA     MET +  +SS  S
Subjt:  FRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEERETSSGWS

Query:  PTTFEQVKEAPLLSPL
          TF   + +  L  L
Subjt:  PTTFEQVKEAPLLSPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACAAGCTCAATCGCGACGTCTCAGAGTTAACGATTCGGTATCGAAGACCTTTCGAGGGGTTCGAAAGCGGAGTTGGGGTCGCTATGTCTCGGAGATACGGCTACC
GGGGAAGAAAACGCGTGTATGGCTTGGCTCCTTCGCCTCCCCCGAGATGGCGGCTCGTGCCTATGACTCGGCAGCGGCATTTTTGAGAGGCACCTCCGCCGTGCTCAACT
TCCCCGATTCTGTGAGCTCACTCCCACAGCCGGAGTCGTGCTCGAGAGAACACATTCAATCGGCAGCGGCAAAGGCAGCAGCGCAAATGCGAGAGATGGAAACTGAAGAG
CGAGAGACAAGCAGTGGATGGAGTCCGACAACGTTCGAGCAGGTGAAGGAAGCGCCATTGTTGAGTCCATTGAGGTTGGGGCTTCTTGGCTTTGGACCAGCCTCAGATGA
AGACACTTTGTTGTTACCAGCCTATTTCTAA
mRNA sequenceShow/hide mRNA sequence
CAACAAACTCCTAAACTTCAAAACTCAATTTACTTTCCTTGCTACTTCTTCTTCTTCAATCTCTACTCTCAATGACACAAGCTCAATCGCGACGTCTCAGAGTTAACGAT
TCGGTATCGAAGACCTTTCGAGGGGTTCGAAAGCGGAGTTGGGGTCGCTATGTCTCGGAGATACGGCTACCGGGGAAGAAAACGCGTGTATGGCTTGGCTCCTTCGCCTC
CCCCGAGATGGCGGCTCGTGCCTATGACTCGGCAGCGGCATTTTTGAGAGGCACCTCCGCCGTGCTCAACTTCCCCGATTCTGTGAGCTCACTCCCACAGCCGGAGTCGT
GCTCGAGAGAACACATTCAATCGGCAGCGGCAAAGGCAGCAGCGCAAATGCGAGAGATGGAAACTGAAGAGCGAGAGACAAGCAGTGGATGGAGTCCGACAACGTTCGAG
CAGGTGAAGGAAGCGCCATTGTTGAGTCCATTGAGGTTGGGGCTTCTTGGCTTTGGACCAGCCTCAGATGAAGACACTTTGTTGTTACCAGCCTATTTCTAAATTTTTAA
CAATATACTTGAGTCAATTGACAATGATATATTACTTGTGTATTCATTTTGGGATGAATGTGAAGAAAGATTTGATTCTTTCATAGAA
Protein sequenceShow/hide protein sequence
MTQAQSRRLRVNDSVSKTFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFASPEMAARAYDSAAAFLRGTSAVLNFPDSVSSLPQPESCSREHIQSAAAKAAAQMREMETEE
RETSSGWSPTTFEQVKEAPLLSPLRLGLLGFGPASDEDTLLLPAYF