; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G01890 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G01890
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionBeta-galactosidase
Genome locationClcChr08:3633931..3638168
RNA-Seq ExpressionClc08G01890
SyntenyClc08G01890
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031941.1 Beta-galactosidase [Cucumis melo var. makuwa]1.1e-6641.77Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL
        P+P+LMEV  EV  EE++++AM ++ TP  DS  F A+SS    D  NGK                        PP G    SN   +     +  TT  
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL

Query:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH
           +   +P+VS  +T                          I  SGATDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  LQNVLH
Subjt:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH

Query:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------
        VPK+ YNLLS+SKIT++L+C+ +F P+ V FQD++SG  IGT RH+RGLY L DDTS                                           
Subjt:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------

Query:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK
                           S+VTTSSGK WFVTFID+HTRLTWV+L+++KSEV SIFQ FY TI+TQF+ KI I RSDNGREF  + L EFL++K
Subjt:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK

KAA0061456.1 Beta-galactosidase [Cucumis melo var. makuwa]1.1e-6641.77Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL
        P+P+LMEV  EV  EE++++AM ++ TP  DS  F A+SS    D  NGK                        PP G    SN   +     +  TT  
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL

Query:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH
           +   +P+VS  +T                          I  SGATDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  LQNVLH
Subjt:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH

Query:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------
        VPK+ YNLLS+SKIT++L+C+ +F P+ V FQD++SG  IGT RH+RGLY L DDTS                                           
Subjt:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------

Query:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK
                           S+VTTSSGK WFVTFID+HTRLTWV+L+++KSEV SIFQ FY TI+TQF+ KI I RSDNGREF  + L EFL++K
Subjt:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK

TYK03453.1 Beta-galactosidase [Cucumis melo var. makuwa]1.2e-6741.37Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGKP-----------------------PLGISVGSNMVDHQMANDVLRTTSLI
        P+P+LMEV  EVC EE++++AM ++ TP  DS  F A+SS    D  NGK                        PLG    S+          +  T+  
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGKP-----------------------PLGISVGSNMVDHQMANDVLRTTSLI

Query:  LVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHV
          +   +P+ S  +T                          I  SGATDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  LQNVLHV
Subjt:  LVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHV

Query:  PKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS--------------------------------------------
        PK+ YNLLS+SKIT++L+C+ +F P+ V FQD++SG  IGT RH+RGLY L DDTS                                            
Subjt:  PKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS--------------------------------------------

Query:  ------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK
                          S+VTTSSGK WFVTFID+HTRLTWV+L+++KSEV SIFQ FY TI+TQF+ KI I RSDNGREF  + L EFL++K
Subjt:  ------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK

TYK11913.1 Beta-galactosidase [Cucumis melo var. makuwa]1.2e-6749.84Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGKPPLGISVGSNMVDHQMANDVLRTTSLI-LVNCLANPSVSSLRT-IAQSGA
        P+P+LMEV  EV  EE++++AM+++ TP  DS  F A+++       NG P + +   S +V  +     L   +   +   L   SV      I  SGA
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGKPPLGISVGSNMVDHQMANDVLRTTSLI-LVNCLANPSVSSLRT-IAQSGA

Query:  TDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHVPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRG
        TDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  L+NVLHVPK  YNLLS+S I  +L+C+V+F P+ + FQD++SG  IGT RH+RG
Subjt:  TDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHVPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRG

Query:  LYFLHDDTS----------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTL
        LY L DDTS                      S+VTTSS K WFVTFID+HTRLTWV+L+T+KSEV SIFQ FY  I+TQF+ KI I RSDNGREF  + L
Subjt:  LYFLHDDTS----------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTL

Query:  REFLSTK
         EFL++K
Subjt:  REFLSTK

TYK31050.1 Beta-galactosidase [Cucumis melo var. makuwa]1.1e-6641.77Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL
        P+P+LMEV  EV  EE++++AM ++ TP  DS  F A+SS    D  NGK                        PP G    SN   +     +  TT  
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL

Query:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH
           +   +P+VS  +T                          I  SGATDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  LQNVLH
Subjt:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH

Query:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------
        VPK+ YNLLS+SKIT++L+C+ +F P+ V FQD++SG  IGT RH+RGLY L DDTS                                           
Subjt:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------

Query:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK
                           S+VTTSSGK WFVTFID+HTRLTWV+L+++KSEV SIFQ FY TI+TQF+ KI I RSDNGREF  + L EFL++K
Subjt:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK

TrEMBL top hitse value%identityAlignment
A0A5A7SQW1 Beta-galactosidase5.1e-6741.77Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL
        P+P+LMEV  EV  EE++++AM ++ TP  DS  F A+SS    D  NGK                        PP G    SN   +     +  TT  
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL

Query:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH
           +   +P+VS  +T                          I  SGATDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  LQNVLH
Subjt:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH

Query:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------
        VPK+ YNLLS+SKIT++L+C+ +F P+ V FQD++SG  IGT RH+RGLY L DDTS                                           
Subjt:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------

Query:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK
                           S+VTTSSGK WFVTFID+HTRLTWV+L+++KSEV SIFQ FY TI+TQF+ KI I RSDNGREF  + L EFL++K
Subjt:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK

A0A5A7V4Q4 Beta-galactosidase5.1e-6741.77Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL
        P+P+LMEV  EV  EE++++AM ++ TP  DS  F A+SS    D  NGK                        PP G    SN   +     +  TT  
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL

Query:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH
           +   +P+VS  +T                          I  SGATDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  LQNVLH
Subjt:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH

Query:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------
        VPK+ YNLLS+SKIT++L+C+ +F P+ V FQD++SG  IGT RH+RGLY L DDTS                                           
Subjt:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------

Query:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK
                           S+VTTSSGK WFVTFID+HTRLTWV+L+++KSEV SIFQ FY TI+TQF+ KI I RSDNGREF  + L EFL++K
Subjt:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK

A0A5D3BUT8 Beta-galactosidase6.0e-6841.37Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGKP-----------------------PLGISVGSNMVDHQMANDVLRTTSLI
        P+P+LMEV  EVC EE++++AM ++ TP  DS  F A+SS    D  NGK                        PLG    S+          +  T+  
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGKP-----------------------PLGISVGSNMVDHQMANDVLRTTSLI

Query:  LVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHV
          +   +P+ S  +T                          I  SGATDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  LQNVLHV
Subjt:  LVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHV

Query:  PKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS--------------------------------------------
        PK+ YNLLS+SKIT++L+C+ +F P+ V FQD++SG  IGT RH+RGLY L DDTS                                            
Subjt:  PKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS--------------------------------------------

Query:  ------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK
                          S+VTTSSGK WFVTFID+HTRLTWV+L+++KSEV SIFQ FY TI+TQF+ KI I RSDNGREF  + L EFL++K
Subjt:  ------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK

A0A5D3CJ13 Beta-galactosidase6.0e-6849.84Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGKPPLGISVGSNMVDHQMANDVLRTTSLI-LVNCLANPSVSSLRT-IAQSGA
        P+P+LMEV  EV  EE++++AM+++ TP  DS  F A+++       NG P + +   S +V  +     L   +   +   L   SV      I  SGA
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGKPPLGISVGSNMVDHQMANDVLRTTSLI-LVNCLANPSVSSLRT-IAQSGA

Query:  TDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHVPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRG
        TDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  L+NVLHVPK  YNLLS+S I  +L+C+V+F P+ + FQD++SG  IGT RH+RG
Subjt:  TDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHVPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRG

Query:  LYFLHDDTS----------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTL
        LY L DDTS                      S+VTTSS K WFVTFID+HTRLTWV+L+T+KSEV SIFQ FY  I+TQF+ KI I RSDNGREF  + L
Subjt:  LYFLHDDTS----------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTL

Query:  REFLSTK
         EFL++K
Subjt:  REFLSTK

A0A5D3E603 Beta-galactosidase5.1e-6741.77Show/hide
Query:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL
        P+P+LMEV  EV  EE++++AM ++ TP  DS  F A+SS    D  NGK                        PP G    SN   +     +  TT  
Subjt:  PIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRDNQNGK------------------------PPLGISVGSNMVDHQMANDVLRTTSL

Query:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH
           +   +P+VS  +T                          I  SGATDHLTGSS +F++Y  CAGNEKI I DGS A +AGKG I  FDG  LQNVLH
Subjt:  ILVNCLANPSVSSLRT--------------------------IAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLH

Query:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------
        VPK+ YNLLS+SKIT++L+C+ +F P+ V FQD++SG  IGT RH+RGLY L DDTS                                           
Subjt:  VPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMIGTVRHNRGLYFLHDDTS-------------------------------------------

Query:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK
                           S+VTTSSGK WFVTFID+HTRLTWV+L+++KSEV SIFQ FY TI+TQF+ KI I RSDNGREF  + L EFL++K
Subjt:  -------------------SRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK

SwissProt top hitse value%identityAlignment
O13527 Truncated transposon Ty1-A Gag-Pol polyprotein1.2e-0430Show/hide
Query:  FLHDDTSSRV--TTSSGKCWFVTFIDNHTRLTWVFLLTNKSE--VSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTKVLT
        +LH D    V     S   +F++F D  T+L WV+ L ++ E  +  +F      I+ QF A +++ + D G E+   TL +FL    +T
Subjt:  FLHDDTSSRV--TTSSGKCWFVTFIDNHTRLTWVFLLTNKSE--VSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTKVLT

P04146 Copia protein2.5e-1035.15Show/hide
Query:  GHISSFDGLILQ----NVLHVPKIPYNL-LSMSKITKDLNCRVVFSPDDVFQDLNSGTMIGTVRHNRGLYFLHDDTSSRVT--TSSGKCWFVTFIDNHTR
        GHIS  DG +L+    N+     +  NL LS       LN +    P   F+ L   T I      R L+ +H D    +T  T   K +FV F+D  T 
Subjt:  GHISSFDGLILQ----NVLHVPKIPYNL-LSMSKITKDLNCRVVFSPDDVFQDLNSGTMIGTVRHNRGLYFLHDDTSSRVT--TSSGKCWFVTFIDNHTR

Query:  LTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK----VLTVAH
            +L+  KS+V S+FQ F    E  FN K+V    DNGRE+L+N +R+F   K     LTV H
Subjt:  LTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLSTK----VLTVAH

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-0735.62Show/hide
Query:  VTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLST
        + +  G  +FVTFID+ +R  WV++L  K +V  +FQ+F+  +E +   K+   RSDNG E+ +    E+ S+
Subjt:  VTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLST

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.5e-1022.53Show/hide
Query:  SSLRTIAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHIS---SFDGLILQNVLHVPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDL
        SS   +  SGAT H+T   NN   +    G + + + DGS   ++  G  S       L L N+L+VP I  NL+S+ ++       V F P     +DL
Subjt:  SSLRTIAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHIS---SFDGLILQNVLHVPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDL

Query:  NSGTMI-----------------------------------------------------------------------------------GTVRHNRGLYF
        N+G  +                                                                                    T+   R L +
Subjt:  NSGTMI-----------------------------------------------------------------------------------GTVRHNRGLYF

Query:  LHDDT-SSRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLS----TKVLTVAHIINRRGW
        ++ D  SS + +     ++V F+D+ TR TW++ L  KS+V   F  F   +E +F  +I  F SDNG EF+   L E+ S    + + +  H     G 
Subjt:  LHDDT-SSRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSDNGREFLTNTLREFLS----TKVLTVAHIINRRGW

Query:  ---------DLSLLLIGHPSSPST
                 +  L L+ H S P T
Subjt:  ---------DLSLLLIGHPSSPST

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.5e-1221.23Show/hide
Query:  DGMGKLVDPVHEFGPIPTLMEVYSEVCFEENKSSAMNII-ATPVTDSVV-----------------------------FKAKSSGSTRDNQNGKPPLGIS
        D    ++D +      P+L E++  +   E+K  A+N     P+T +VV                             ++  SSGS  DN+  KP LG  
Subjt:  DGMGKLVDPVHEFGPIPTLMEVYSEVCFEENKSSAMNII-ATPVTDSVV-----------------------------FKAKSSGSTRDNQNGKPPLGIS

Query:  VGSNMVDH-----------QMANDVLRTTSLIL-----VNCLANPSVSSLRTIAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHIS--
           ++  H           Q   +  ++TS         N   N   ++   +  SGAT H+T   NN   +    G + + I DGS   +   G  S  
Subjt:  VGSNMVDH-----------QMANDVLRTTSLIL-----VNCLANPSVSSLRTIAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHIS--

Query:  -SFDGLILQNVLHVPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMI-----------------------------------------------
         S   L L  VL+VP I  NL+S+ ++       V F P     +DLN+G  +                                               
Subjt:  -SFDGLILQNVLHVPKIPYNLLSMSKITKDLNCRVVFSPDDV-FQDLNSGTMI-----------------------------------------------

Query:  ------------------------------------GTVRHNRGLYFLHDDT-SSRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIE
                                             T+  ++ L +++ D  SS + +     ++V F+D+ TR TW++ L  KS+V   F  F + +E
Subjt:  ------------------------------------GTVRHNRGLYFLHDDT-SSRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIE

Query:  TQFNAKIVIFRSDNGREFLTNTLREFLSTKVLT-------------VAHIINRRGWDLSLLLIGHPSSPST
         +F  +I    SDNG EF+   LR++LS   ++             ++   +R   ++ L L+ H S P T
Subjt:  TQFNAKIVIFRSDNGREFLTNTLREFLSTKVLT-------------VAHIINRRGWDLSLLLIGHPSSPST

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGCTGTGCACAAGGAGAAATAATAAACGAGTCAGATGTGTCTAATGATTATTTGTCCTTGTACGACTCTATCACAAGAAGATTTATCACACCTGACGGTGCCTA
CTACTACTGCATGAATAATTTTGTCCACGATGTGCACAATTACTCCTTAGAACACAATTTACCAGAGTTGAGTTTAATGAGACTCAATGTTGCTGACACTGATCGAAAAC
GTATTCGTCGTAGACGACAGAAACAACGTGACGAAGGTGTTCTAGAGCAACCCGATGACCAAGAACCTCACATATTACAACCAGACATTGCATCCGGTTCTGGCCATCAA
CAGAAATATTATGCACACGATAAATTTCCATCTGTCGTCACCCAACAGGATATCGACAATGTAATCCACCAGCAACAACAAATTGAAGTGCCTGTGCCTCGTCGTGGACA
ACGTGCGCGAAGAAGACCACCATTCCAAGTTGTTGCTGTTGCGGATGGAATGGGCAAACTCGTGGACCCGGTCCACGAGTTTGGACCAATACCGACCCTTATGGAAGTCT
ATTCCGAGGTTTGTTTTGAGGAAAACAAATCCAGTGCTATGAACATCATAGCTACTCCCGTGACTGACTCTGTTGTCTTCAAAGCTAAATCATCTGGTTCTACTAGAGAC
AATCAAAATGGGAAACCACCTCTAGGGATTAGTGTTGGAAGTAACATGGTCGACCACCAAATGGCAAATGACGTCCTCCGAACGACAAGCCTAATTCTAGTGAACTGCCT
AGCTAACCCTAGTGTCTCATCTCTTAGAACTATTGCCCAATCAGGAGCCACAGATCATCTGACTGGATCCTCTAATAATTTCCTCACATATCATTTGTGTGCTGGTAATG
AAAAAATATGGATTGTTGATGGATCGTTTGCTTCGGTTGCGGGCAAAGGCCACATTTCTTCTTTTGATGGTTTGATATTACAGAATGTGTTGCATGTCCCTAAAATACCT
TACAATTTATTGTCTATGAGTAAGATAACTAAAGATCTGAATTGTCGTGTGGTGTTCTCACCAGATGATGTTTTCCAAGACTTGAACTCGGGAACGATGATTGGCACTGT
TCGGCACAATAGGGGACTCTATTTCCTTCATGATGATACTTCTTCTAGAGTTACAACCTCTTCGGGTAAGTGCTGGTTCGTGACCTTCATCGATAACCACACTCGCCTTA
CTTGGGTCTTTCTCCTCACTAATAAATCTGAGGTCTCATCCATTTTCCAACAATTTTATACTACCATTGAGACTCAGTTCAATGCCAAAATTGTCATCTTTCGGAGTGAC
AATGGTCGTGAGTTCCTAACTAATACCCTTCGTGAGTTTCTGTCCACTAAAGTTTTGACTGTAGCTCACATTATAAATCGGAGAGGATGGGACCTAAGTTTGCTGTTAAT
AGGACATCCGTCGTCACCTTCTACGAACGTCGTTGAGCTTAGATGTTTACGTGGAGATGTCTGGTTTATCATGGATAGGCAAGATCTCTATTTCGCTCATGTAGGTTTTG
ACCCTCAACTCCGTAGGCCGAGTTCCCCAGGTTCTGATTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACCGCTGTGCACAAGGAGAAATAATAAACGAGTCAGATGTGTCTAATGATTATTTGTCCTTGTACGACTCTATCACAAGAAGATTTATCACACCTGACGGTGCCTA
CTACTACTGCATGAATAATTTTGTCCACGATGTGCACAATTACTCCTTAGAACACAATTTACCAGAGTTGAGTTTAATGAGACTCAATGTTGCTGACACTGATCGAAAAC
GTATTCGTCGTAGACGACAGAAACAACGTGACGAAGGTGTTCTAGAGCAACCCGATGACCAAGAACCTCACATATTACAACCAGACATTGCATCCGGTTCTGGCCATCAA
CAGAAATATTATGCACACGATAAATTTCCATCTGTCGTCACCCAACAGGATATCGACAATGTAATCCACCAGCAACAACAAATTGAAGTGCCTGTGCCTCGTCGTGGACA
ACGTGCGCGAAGAAGACCACCATTCCAAGTTGTTGCTGTTGCGGATGGAATGGGCAAACTCGTGGACCCGGTCCACGAGTTTGGACCAATACCGACCCTTATGGAAGTCT
ATTCCGAGGTTTGTTTTGAGGAAAACAAATCCAGTGCTATGAACATCATAGCTACTCCCGTGACTGACTCTGTTGTCTTCAAAGCTAAATCATCTGGTTCTACTAGAGAC
AATCAAAATGGGAAACCACCTCTAGGGATTAGTGTTGGAAGTAACATGGTCGACCACCAAATGGCAAATGACGTCCTCCGAACGACAAGCCTAATTCTAGTGAACTGCCT
AGCTAACCCTAGTGTCTCATCTCTTAGAACTATTGCCCAATCAGGAGCCACAGATCATCTGACTGGATCCTCTAATAATTTCCTCACATATCATTTGTGTGCTGGTAATG
AAAAAATATGGATTGTTGATGGATCGTTTGCTTCGGTTGCGGGCAAAGGCCACATTTCTTCTTTTGATGGTTTGATATTACAGAATGTGTTGCATGTCCCTAAAATACCT
TACAATTTATTGTCTATGAGTAAGATAACTAAAGATCTGAATTGTCGTGTGGTGTTCTCACCAGATGATGTTTTCCAAGACTTGAACTCGGGAACGATGATTGGCACTGT
TCGGCACAATAGGGGACTCTATTTCCTTCATGATGATACTTCTTCTAGAGTTACAACCTCTTCGGGTAAGTGCTGGTTCGTGACCTTCATCGATAACCACACTCGCCTTA
CTTGGGTCTTTCTCCTCACTAATAAATCTGAGGTCTCATCCATTTTCCAACAATTTTATACTACCATTGAGACTCAGTTCAATGCCAAAATTGTCATCTTTCGGAGTGAC
AATGGTCGTGAGTTCCTAACTAATACCCTTCGTGAGTTTCTGTCCACTAAAGTTTTGACTGTAGCTCACATTATAAATCGGAGAGGATGGGACCTAAGTTTGCTGTTAAT
AGGACATCCGTCGTCACCTTCTACGAACGTCGTTGAGCTTAGATGTTTACGTGGAGATGTCTGGTTTATCATGGATAGGCAAGATCTCTATTTCGCTCATGTAGGTTTTG
ACCCTCAACTCCGTAGGCCGAGTTCCCCAGGTTCTGATTCTTAG
Protein sequenceShow/hide protein sequence
MDRCAQGEIINESDVSNDYLSLYDSITRRFITPDGAYYYCMNNFVHDVHNYSLEHNLPELSLMRLNVADTDRKRIRRRRQKQRDEGVLEQPDDQEPHILQPDIASGSGHQ
QKYYAHDKFPSVVTQQDIDNVIHQQQQIEVPVPRRGQRARRRPPFQVVAVADGMGKLVDPVHEFGPIPTLMEVYSEVCFEENKSSAMNIIATPVTDSVVFKAKSSGSTRD
NQNGKPPLGISVGSNMVDHQMANDVLRTTSLILVNCLANPSVSSLRTIAQSGATDHLTGSSNNFLTYHLCAGNEKIWIVDGSFASVAGKGHISSFDGLILQNVLHVPKIP
YNLLSMSKITKDLNCRVVFSPDDVFQDLNSGTMIGTVRHNRGLYFLHDDTSSRVTTSSGKCWFVTFIDNHTRLTWVFLLTNKSEVSSIFQQFYTTIETQFNAKIVIFRSD
NGREFLTNTLREFLSTKVLTVAHIINRRGWDLSLLLIGHPSSPSTNVVELRCLRGDVWFIMDRQDLYFAHVGFDPQLRRPSSPGSDS