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Clc08G01990 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G01990
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA-binding protein
Genome locationClcChr08:3795988..3796910
RNA-Seq ExpressionClc08G01990
SyntenyClc08G01990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601448.1 Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp. sororia]6.0e-2482.89Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
        +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQRLKEERA EM++RMRGS
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
KAG7032230.1 hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma]6.0e-2482.89Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
        +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQRLKEERA EM++RMRGS
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
XP_022957544.1 uncharacterized protein LOC111458914 [Cucurbita moschata]6.0e-2482.89Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
        +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQRLKEERA EM++RMRGS
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
XP_022996766.1 uncharacterized protein LOC111491881 [Cucurbita maxima]6.0e-2482.89Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
        +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQRLKEERA EM++RMRGS
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
XP_038891818.1 uncharacterized protein LOC120081194 [Benincasa hispida]3.9e-2379.22Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGSW
        +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+  V D FF+P IKEIAQRLKEERA EM+ER + SW
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGSW
TrEMBL top hitse value%identityAlignment
A0A1S3BEG4 uncharacterized protein LOC1034891467.2e-2376.62Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGSW
        +AEKK KKKAYSR KQI RLQGKKPPPNP+PS IK+IQAEE+K V D FF+P IKEIAQRLKEE+A EM+ER RG W
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGSW
A0A5A7SZA7 Uncharacterized protein7.2e-2376.62Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGSW
        +AEKK KKKAYSR KQI RLQGKKPPPNP+PS IK+IQAEE+K V D FF+P IKEIAQRLKEE+A EM+ER RG W
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGSW
A0A6J1DDQ7 uncharacterized protein LOC1110191475.5e-2380Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRG
        +AEKK KKKAY+R KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQRLKEERA EM++RMRG
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRG
A0A6J1GZF0 uncharacterized protein LOC1114589142.9e-2482.89Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
        +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQRLKEERA EM++RMRGS
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
A0A6J1KC52 uncharacterized protein LOC1114918812.9e-2482.89Show/hide
Query:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
        +AEKKAKKKAYSR KQI RLQGKKPPPNPYPS IKEIQAEE+K V D FF+P IKEIAQRLKEERA EM++RMRGS
Subjt:  QAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G26750.1 unknown protein2.2e-0837.8Show/hide
Query:  EYLACRQAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS
        EYL    +E+K  KKAY R K++  +Q K PPP PYPS  K +  + K    D F  P+++ +  +LK E+ + +++R  GS
Subjt:  EYLACRQAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGTCAAGATAGGTGATACTAGAGCAAGCGATACCAGACTAAATAGAGCGATACTAGCGAGAGCAAGATTGAGCGAGACTAGAGAGAGCGAGAGTGAGAACGAGAT
TAGACAGAGAGAGCGAAAATATGTAATACCATCTCGCCCTTGCTCGTTTCGCTCTCGAGGCGAGAGAAAGCACATATCATTATCCCTCAAGCGTACACTGCTGCCAATCG
TCAGTTTTCTGCTTCATTGGTCATTGTTCATGGTAGCAGCCAGCCATGCTGCCGTTCATCCGCTGTTGGTCGTCTGCCCTTCGTCCGTTAGATCGTGCCGCTGCCATCGT
GCCTCTACAGCCGTTCGTCAGATTGTACCTCTACCATTTGTTGTAACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTTGGCTTGCAGGCAGGCAGAGAAAAA
GGCGAAAAAGAAGGCTTACTCTCGCTCGAAGCAAATTACACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCTTATCCAAGTGTTATTAAGGAGATACAGGCTGAGGAAA
AAAAAATTGTCCACGATCATTTCTTCGACCCCAATATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAATTGAAATGAAGGAAAGAATGCGAGGTAGCTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGTCAAGATAGGTGATACTAGAGCAAGCGATACCAGACTAAATAGAGCGATACTAGCGAGAGCAAGATTGAGCGAGACTAGAGAGAGCGAGAGTGAGAACGAGAT
TAGACAGAGAGAGCGAAAATATGTAATACCATCTCGCCCTTGCTCGTTTCGCTCTCGAGGCGAGAGAAAGCACATATCATTATCCCTCAAGCGTACACTGCTGCCAATCG
TCAGTTTTCTGCTTCATTGGTCATTGTTCATGGTAGCAGCCAGCCATGCTGCCGTTCATCCGCTGTTGGTCGTCTGCCCTTCGTCCGTTAGATCGTGCCGCTGCCATCGT
GCCTCTACAGCCGTTCGTCAGATTGTACCTCTACCATTTGTTGTAACAGGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTTGGCTTGCAGGCAGGCAGAGAAAAA
GGCGAAAAAGAAGGCTTACTCTCGCTCGAAGCAAATTACACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCTTATCCAAGTGTTATTAAGGAGATACAGGCTGAGGAAA
AAAAAATTGTCCACGATCATTTCTTCGACCCCAATATTAAAGAGATTGCACAAAGGTTGAAGGAGGAGAGAGCAATTGAAATGAAGGAAAGAATGCGAGGTAGCTGGTGA
Protein sequenceShow/hide protein sequence
MLVKIGDTRASDTRLNRAILARARLSETRESESENEIRQRERKYVIPSRPCSFRSRGERKHISLSLKRTLLPIVSFLLHWSLFMVAASHAAVHPLLVVCPSSVRSCRCHR
ASTAVRQIVPLPFVVTGSVVSILLQPEYLACRQAEKKAKKKAYSRSKQITRLQGKKPPPNPYPSVIKEIQAEEKKIVHDHFFDPNIKEIAQRLKEERAIEMKERMRGSW