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Clc08G02000 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02000
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionkeratin, type II cytoskeletal 3 isoform X1
Genome locationClcChr08:3807785..3811604
RNA-Seq ExpressionClc08G02000
SyntenyClc08G02000
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141514.1 glycine-rich cell wall structural protein 1 [Cucumis sativus]3.8e-6789.58Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR+Q  ED++GLLWNLPVLKSSR G LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GD+L G QSIFPH+DD+GALVD+LVLNTKRLIRATS+EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

XP_016902400.1 PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo]5.8e-6890.28Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR++  ED++GLLWNLPVLKSSR G LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GD+L GHQSIFPH+DD+GALVD+LVLNTKRLIRATSREIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

XP_022932819.1 keratin, type II cytoskeletal 2 epidermal isoform X1 [Cucurbita moschata]1.4e-6687.5Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+RH+G ED+ G+LW LPVLKSSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNG QSIFPHRD++GALVDEL LNTK+LIR T++EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

XP_023521208.1 ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo]9.0e-6989.58Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+RH+GRED+ G+LW LPVLKSSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNGHQSIFPHRD++GALVDEL LNTK+LIR T+REIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

XP_038889093.1 ctenidin-1 isoform X1 [Benincasa hispida]5.8e-6891.67Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NGNRHQG ED+ GLLWNLPVLKSSR GKLGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLL+GHQSIFP +DD+ ALVDELVLN+KRLIRATSREIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

TrEMBL top hitse value%identityAlignment
A0A0A0KSM8 Uncharacterized protein1.8e-6789.58Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR+Q  ED++GLLWNLPVLKSSR G LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GD+L G QSIFPH+DD+GALVD+LVLNTKRLIRATS+EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

A0A1S4E347 glycine-rich cell wall structural protein 12.8e-6890.28Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR++  ED++GLLWNLPVLKSSR G LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GD+L GHQSIFPH+DD+GALVD+LVLNTKRLIRATSREIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X16.9e-6787.5Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+RH+G ED+ G+LW LPVLKSSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNG QSIFPHRD++GALVDEL LNTK+LIR T++EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X24.2e-6486.11Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+RH+G ED+ G+LW LPVLKSSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNG QSIFP +D++GALVDEL LNTK+LIR T++EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X12.9e-6585.42Show/hide
Query:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R +G ED+ G+LW LPVLKSSRIG+LGPAFGLGVGCGVGFGIGL+GGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR
        GDLLNG QSIFPHRD++GA+VDEL LNTK+LI+ T++EIDKWKR
Subjt:  GDLLNGHQSIFPHRDDVGALVDELVLNTKRLIRATSREIDKWKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27695.1 glycine-rich protein3.7e-0456.6Show/hide
Query:  LGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG
        +G  FG GVGC  GFG+G     GFG G+P   LG G G GCGVGLG G+G G
Subjt:  LGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG

AT1G27695.2 glycine-rich protein3.7e-0456.6Show/hide
Query:  LGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG
        +G  FG GVGC  GFG+G     GFG G+P   LG G G GCGVGLG G+G G
Subjt:  LGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVG

AT1G66820.1 glycine-rich protein5.5e-0851.43Show/hide
Query:  LGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDD-KRRY
        +GP  G G+GCG G GIGL GG G G    GL      LGFG+G G G G G+G+GVG G + DD K R+
Subjt:  LGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDD-KRRY

AT4G10330.1 glycine-rich protein1.0e-4161.48Show/hide
Query:  NRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLNGH
        NR +  +DDKGLLW LP ++   IGK+GPAFGLGVGCG GFG GLIGG GFGPG+PGLQ G G GAGCG+G+GFGYGVGRG A D  R Y NVG      
Subjt:  NRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLNGH

Query:  QSIFPHRDDVGALVDELVLNTKRLIRATSREIDKW
            P  ++V +L+DELV++TK+L++AT+ EIDKW
Subjt:  QSIFPHRDDVGALVDELVLNTKRLIRATSREIDKW

AT4G14301.1 unknown protein6.3e-0455.17Show/hide
Query:  IGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRG
        IGK G  FG G+G G GFG G+  G GFG GI G   G G G G G G GFG G+G+G
Subjt:  IGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAAATATGAACGGAAACAGACACCAAGGCCGAGAAGATGACAAAGGATTACTCTGGAATCTTCCAGTTCTTAAATCTTCCAGAATCGGAAAGTTAGGTCCCGC
CTTCGGTCTGGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCATCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGCTTACAACTTGGCTTTGGTCTTGGTGCTG
GATGTGGAGTTGGCTTAGGATTTGGCTATGGTGTTGGCAGGGGCATTGCTCAAGATGACAAACGGAGATACTCTAACGTCGGGGATCTATTAAATGGTCATCAAAGTATT
TTTCCTCATAGGGACGATGTTGGCGCGCTTGTTGATGAGCTTGTCTTAAATACAAAGAGACTTATACGAGCTACTTCAAGGGAGATTGACAAGTGGAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
AGAGTATTTTCTATTCATATTCCCGAATTACTTGTTCATATCATCTTCTTCTTATTCGTCCCGACGAGGAAGAAATCAGAAATGCCTCGAAATATGAACGGAAACAGACA
CCAAGGCCGAGAAGATGACAAAGGATTACTCTGGAATCTTCCAGTTCTTAAATCTTCCAGAATCGGAAAGTTAGGTCCCGCCTTCGGTCTGGGCGTTGGTTGTGGCGTCG
GCTTTGGCATCGGCCTCATCGGAGGTGCTGGATTTGGTCCAGGAATTCCTGGCTTACAACTTGGCTTTGGTCTTGGTGCTGGATGTGGAGTTGGCTTAGGATTTGGCTAT
GGTGTTGGCAGGGGCATTGCTCAAGATGACAAACGGAGATACTCTAACGTCGGGGATCTATTAAATGGTCATCAAAGTATTTTTCCTCATAGGGACGATGTTGGCGCGCT
TGTTGATGAGCTTGTCTTAAATACAAAGAGACTTATACGAGCTACTTCAAGGGAGATTGACAAGTGGAAAAGATGAATTTACTTATCCTGTTTTTACATTGTATAAGTCC
AATCCCCTCCCCCCATCATTAGAATGAACCAGAAAAAAAACATAGAAGAAAGAAACATGCTGGCTGTCTGTCTATATGGTGTTATATTACTCTGTGGCTTTTAGAGGCAA
AAGTTATGTACAATTGTTTCGAAAGATATATTTAGTTGCTCGAAATCTCATGTGCAGTGGATTTTGAGCAGTCATAAAATGTCGAATACTTGATGAATTAGTTTAGATGG
TGTCTTGAAGGCTGATTTATCATGTCCATACTACAGAAAAAGCTGTTTCATGAGAGGATACTTGTTTCATTTTAAGCTTTTTCTGGCTCATTATGAT
Protein sequenceShow/hide protein sequence
MPRNMNGNRHQGREDDKGLLWNLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLIGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLNGHQSI
FPHRDDVGALVDELVLNTKRLIRATSREIDKWKR