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Clc08G02090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr08:3886162..3887653
RNA-Seq ExpressionClc08G02090
SyntenyClc08G02090
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0015074 - DNA integration (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043531 - ADP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABO36622.1 copia LTR rider [Solanum lycopersicum]2.8e-3469.3Show/hide
Query:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT
        E   LEEK HSTIMLCLADDV+ EV+DEET   LWLKLESLYM KSLT KL LK+RL+ L M EGT LR+HL+QLN +LL+LRNI++K++DEDA LILL 
Subjt:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT

Query:  SLPLSYETFVYSYI
        SLP+S+E FV S+I
Subjt:  SLPLSYETFVYSYI

KAG6390907.1 hypothetical protein SASPL_148652 [Salvia splendens]3.6e-3469.3Show/hide
Query:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT
        +W TL EK HSTIMLCL+DDV+IEVA++ET  +LW KLESLYM KSLT KL LK+RL+ LH QEG  LRDHL+ LNKILLDLRN+E+KV+DEDA LILL 
Subjt:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT

Query:  SLPLSYETFVYSYI
        SL  SY+ FV S++
Subjt:  SLPLSYETFVYSYI

KAG6394709.1 hypothetical protein SASPL_145299 [Salvia splendens]1.5e-3571.05Show/hide
Query:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT
        EW TL+EK HSTIMLCL+DDV+IEV D E   +LW KLESLYM+KSLT KL LK+ L+ L MQEGT LRDHL+ LNKILLDLRN+E+KV+DEDA LILL 
Subjt:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT

Query:  SLPLSYETFVYSYI
        SLP SYE FV S++
Subjt:  SLPLSYETFVYSYI

KAG6437470.1 hypothetical protein SASPL_102387 [Salvia splendens]3.3e-3567.23Show/hide
Query:  MDDAGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDAT
        M+D  EW TL+EK HSTIMLCL+DDV+IEVA++ET  + W KLESLYM KSLT KL LK+RL+ L MQEG  L+DHL+ LNKILLDLRN+++KV DED  
Subjt:  MDDAGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDAT

Query:  LILLTSLPLSYETFVYSYI
        LILL SLP SYE FV S++
Subjt:  LILLTSLPLSYETFVYSYI

KAG6437869.1 hypothetical protein SASPL_102799 [Salvia splendens]2.5e-3570.18Show/hide
Query:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT
        EW TL+EK HSTIMLCL+DDV+IEV D+ET  +LW KLESLY  KSLT KL LK+RL+ L MQEGT LRDHL+ LNKILLDLRN+E+KV+D+DA +ILL 
Subjt:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT

Query:  SLPLSYETFVYSYI
        SLP SYE FV S++
Subjt:  SLPLSYETFVYSYI

TrEMBL top hitse value%identityAlignment
A0A0D3BRH8 Uncharacterized protein8.8e-3467.24Show/hide
Query:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT
        E +  EEK +STI+LCLAD+++IEV+  +    LWLKLESLYM KSLTKKL LK+RL+ L MQEGT L+DHLD LN ILLDLRNI++KV+DEDA LILL 
Subjt:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT

Query:  SLPLSYETFVYSYIGA
        SLP SYE FV S+IG+
Subjt:  SLPLSYETFVYSYIGA

A0A0D3CQC5 CCHC-type domain-containing protein1.3e-3265.81Show/hide
Query:  DAGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLI
        +A + +TLEEK  STI+LCLAD+++IEV+DE+T  SLW KLESLYM KSLT KL LK+RL+ L MQEG  LRDHLD+LN ILL+LRNI++KV+DEDA LI
Subjt:  DAGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLI

Query:  LLTSLPLSYETFVYSYI
        LL  LP S+E FV  +I
Subjt:  LLTSLPLSYETFVYSYI

A0A6D2K463 CCHC-type domain-containing protein5.1e-3467.52Show/hide
Query:  DAGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLI
        DA    +LEEK H+TI+LCLADDV+IEV+ E T   LW KLESLYM KSLT KL LK+RL+ L M EGT LRDHLDQLN +LL+LRNI++KV+DEDA L+
Subjt:  DAGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLI

Query:  LLTSLPLSYETFVYSYI
        LL SLPLSYE +V S+I
Subjt:  LLTSLPLSYETFVYSYI

A0A6P6S469 disease resistance protein RGA2-like1.1e-3369.57Show/hide
Query:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT
        E  +LEEK HSTIML L DDV+ EVA EET T LW+KLESLYM KSLT KL LK+RL+ L MQEGT L++HLDQLN ILL+LRNI++K++DED  LILL 
Subjt:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT

Query:  SLPLSYETFVYSYIG
        SL LSYE FV S+IG
Subjt:  SLPLSYETFVYSYIG

B1N668 Copia LTR rider1.4e-3469.3Show/hide
Query:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT
        E   LEEK HSTIMLCLADDV+ EV+DEET   LWLKLESLYM KSLT KL LK+RL+ L M EGT LR+HL+QLN +LL+LRNI++K++DEDA LILL 
Subjt:  EWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLT

Query:  SLPLSYETFVYSYI
        SLP+S+E FV S+I
Subjt:  SLPLSYETFVYSYI

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-2348.62Show/hide
Query:  AGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLIL
        A +W  L+E+  S I L L+DDVV  + DE+T   +W +LESLYM K+LT KL+LKK+LY LHM EGT+   HL+  N ++  L N+ +K+++ED  ++L
Subjt:  AGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLIL

Query:  LTSLPLSYE
        L SLP SY+
Subjt:  LTSLPLSYE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACGCCGGAGAATGGCAGACTCTGGAAGAGAAGCCTCACTCAACGATCATGCTATGTTTGGCTGATGACGTCGTCATCGAGGTTGCAGATGAAGAAACTACCAC
TAGTCTGTGGTTAAAGTTGGAAAGTCTTTACATGATTAAGTCTTTAACCAAGAAGTTGTTTCTTAAGAAACGTTTGTATCATCTACATATGCAGGAAGGTACGTCTCTTC
GAGATCATCTTGATCAGTTGAATAAAATTTTGTTAGATCTACGTAATATAGAAATTAAAGTTGATGATGAGGATGCTACCTTAATTCTATTGACGTCTTTGCCCTTGTCA
TATGAGACTTTCGTTTACTCGTATATTGGAGCTTGCCGGCCACACACGGCATCCATGCCAAAGACTTTCGGCCACCTTCCTCTCAACTACCTGCCTACTTGTTTTCCATC
TTCCAAAGGTGAAAGTAGGGCTTACACGGGCTACTATTGCTTTCTTCCAGGGGAGTTTGGGTACCAACCTATTGGTTACAAGGACTTGACTGCTGAAATCTCTAAGATTG
TTCGGTTTCATTGGCCTAAGGAATGTGTCAAGACTTATGTCGTCCTATTACTAGGGATGAGATCCAACATGTTCTATTTTTTCTCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
TCTCTTTGAGCTATCTCTGCATCAACAAATAGGGCTTGCGATTGGACTTTCTCTTCAAATACTCGGAGGAGGAACAATTTTTGTTTATGGTAGATCAAGATGTGATCCCT
GCTCAAGCAGCAGGGGCTGTGGGCACCACTGACTGTTAAGTCAAAGAAGGTAGCCATGGATGACGCCGGAGAATGGCAGACTCTGGAAGAGAAGCCTCACTCAACGATCA
TGCTATGTTTGGCTGATGACGTCGTCATCGAGGTTGCAGATGAAGAAACTACCACTAGTCTGTGGTTAAAGTTGGAAAGTCTTTACATGATTAAGTCTTTAACCAAGAAG
TTGTTTCTTAAGAAACGTTTGTATCATCTACATATGCAGGAAGGTACGTCTCTTCGAGATCATCTTGATCAGTTGAATAAAATTTTGTTAGATCTACGTAATATAGAAAT
TAAAGTTGATGATGAGGATGCTACCTTAATTCTATTGACGTCTTTGCCCTTGTCATATGAGACTTTCGTTTACTCGTATATTGGAGCTTGCCGGCCACACACGGCATCCA
TGCCAAAGACTTTCGGCCACCTTCCTCTCAACTACCTGCCTACTTGTTTTCCATCTTCCAAAGGTGAAAGTAGGGCTTACACGGGCTACTATTGCTTTCTTCCAGGGGAG
TTTGGGTACCAACCTATTGGTTACAAGGACTTGACTGCTGAAATCTCTAAGATTGTTCGGTTTCATTGGCCTAAGGAATGTGTCAAGACTTATGTCGTCCTATTACTAGG
GATGAGATCCAACATGTTCTATTTTTTCTCTGCTTAA
Protein sequenceShow/hide protein sequence
MDDAGEWQTLEEKPHSTIMLCLADDVVIEVADEETTTSLWLKLESLYMIKSLTKKLFLKKRLYHLHMQEGTSLRDHLDQLNKILLDLRNIEIKVDDEDATLILLTSLPLS
YETFVYSYIGACRPHTASMPKTFGHLPLNYLPTCFPSSKGESRAYTGYYCFLPGEFGYQPIGYKDLTAEISKIVRFHWPKECVKTYVVLLLGMRSNMFYFFSA