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Clc08G02275 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02275
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING/U-box superfamily protein
Genome locationClcChr08:4332194..4332394
RNA-Seq ExpressionClc08G02275
SyntenyClc08G02275
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442291.1 PREDICTED: RING finger protein 165-like [Cucumis melo]3.4e-1562.69Show/hide
Query:  MKENYDGIGR--EDEVGNQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE
        MK+ +DG  +  E+E+G+ CSVC+E+L G K KEV +IPCGHVY KSC+L WL INNSCPLCR  LE
Subjt:  MKENYDGIGR--EDEVGNQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE

XP_008466247.1 PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo]1.3e-1767.16Show/hide
Query:  MKENYDGIGREDEVGNQCSVCFEDLN----GEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE
        M E YD     +E+G+QC VC+EDLN     EKE+EV +IPCGHVY K CILKWLNINNSCPLCRRE
Subjt:  MKENYDGIGREDEVGNQCSVCFEDLN----GEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE

XP_011650219.1 RING-H2 finger protein ATL16 [Cucumis sativus]4.3e-1870.15Show/hide
Query:  MKENYDGIGREDEVGNQCSVCFEDLNG--EKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE
        MKE YDG G E E+ ++CSVC+EDL+G  EKEKEV +IPCGH++ KSCILKWL I+NSCPLCR ELE
Subjt:  MKENYDGIGREDEVGNQCSVCFEDLNG--EKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE

XP_011652885.1 RING-H2 finger protein ATL66 [Cucumis sativus]1.2e-1562.12Show/hide
Query:  MKENYDGIGREDEVGNQCSVCFEDLNGEKE---KEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE
        M E YD     + +G QC VC+EDLN E+E   +E  +IPCGHVY KSCILKWLN+NNSCPLCR E
Subjt:  MKENYDGIGREDEVGNQCSVCFEDLNGEKE---KEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE

XP_031740500.1 E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus]1.9e-1868.06Show/hide
Query:  MKENYDGIGREDEVG-NQCSVCFEDLNG------EKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE
        MKE YDG G E++ G +QCSVC+E L G      EKEKEV +IPCGH+Y KSCILKWL I+NSCPLCRRELE
Subjt:  MKENYDGIGREDEVG-NQCSVCFEDLNG------EKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE

TrEMBL top hitse value%identityAlignment
A0A0A0L3Z2 RING-type domain-containing protein9.4e-1968.06Show/hide
Query:  MKENYDGIGREDEVG-NQCSVCFEDLNG------EKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE
        MKE YDG G E++ G +QCSVC+E L G      EKEKEV +IPCGH+Y KSCILKWL I+NSCPLCRRELE
Subjt:  MKENYDGIGREDEVG-NQCSVCFEDLNG------EKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE

A0A0A0LHI3 RING-type domain-containing protein5.7e-1662.12Show/hide
Query:  MKENYDGIGREDEVGNQCSVCFEDLNGEKE---KEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE
        M E YD     + +G QC VC+EDLN E+E   +E  +IPCGHVY KSCILKWLN+NNSCPLCR E
Subjt:  MKENYDGIGREDEVGNQCSVCFEDLNGEKE---KEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE

A0A0A0LRB0 RING-type domain-containing protein2.1e-1870.15Show/hide
Query:  MKENYDGIGREDEVGNQCSVCFEDLNG--EKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE
        MKE YDG G E E+ ++CSVC+EDL+G  EKEKEV +IPCGH++ KSCILKWL I+NSCPLCR ELE
Subjt:  MKENYDGIGREDEVGNQCSVCFEDLNG--EKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELE

A0A1S3CR16 E3 ubiquitin-protein ligase synoviolin B-like6.1e-1867.16Show/hide
Query:  MKENYDGIGREDEVGNQCSVCFEDLN----GEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE
        M E YD     +E+G+QC VC+EDLN     EKE+EV +IPCGHVY K CILKWLNINNSCPLCRRE
Subjt:  MKENYDGIGREDEVGNQCSVCFEDLN----GEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE

A0A5A7T784 E3 ubiquitin-protein ligase synoviolin B-like6.1e-1867.16Show/hide
Query:  MKENYDGIGREDEVGNQCSVCFEDLN----GEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE
        M E YD     +E+G+QC VC+EDLN     EKE+EV +IPCGHVY K CILKWLNINNSCPLCRRE
Subjt:  MKENYDGIGREDEVGNQCSVCFEDLN----GEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRE

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING13.4e-1051.02Show/hide
Query:  NQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL
        NQC+VC +D   E+  E  ++PC H+Y K C+L WL ++NSCP+CR EL
Subjt:  NQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL

Q8LPN7 E3 ubiquitin-protein ligase RING1-like8.5e-0946.94Show/hide
Query:  NQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL
        NQC+VC ++   E   +V ++PC HV+ + C+L WL ++NSCP+CR EL
Subjt:  NQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL

Q9VHI7 E3 ubiquitin-protein ligase Iruka2.9e-0943.75Show/hide
Query:  QCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL
        QCS+C++D   + ++ V K+PC H+Y ++CI+ WLN++++CP+CR+ L
Subjt:  QCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL

Q9Y4L5 E3 ubiquitin-protein ligase RNF1155.0e-0942.59Show/hide
Query:  EVGNQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELEG
        ++G +C VC ED     E+EV ++PC H +  SCI+ WL ++++CP+CR+ L G
Subjt:  EVGNQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELEG

Q9Y7K6 Uncharacterized RING finger protein C2A9.04c5.3e-1135.48Show/hide
Query:  ENYDGIGREDEVGNQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL
        ++++ +  +  +   C +C++D+N   EK+  K+PCGH++ K+C+ KWL  + +CPLCR+E+
Subjt:  ENYDGIGREDEVGNQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL

Arabidopsis top hitse value%identityAlignment
AT1G60360.1 RING/U-box superfamily protein1.6e-1047.06Show/hide
Query:  NQCSVCFED--LNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL
        +QC+VC E+  + G    +  ++PC H+Y K CI+ WL +NNSCP+CRR+L
Subjt:  NQCSVCFED--LNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL

AT3G19950.1 RING/U-box superfamily protein6.0e-1046.94Show/hide
Query:  NQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL
        NQC+VC ++   E   +V ++PC HV+ + C+L WL ++NSCP+CR EL
Subjt:  NQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL

AT4G05350.1 RING/U-box superfamily protein6.0e-1045.83Show/hide
Query:  CSVCFEDL-NGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL
        CS+C E L +G K ++V ++ C HV+   C+L+WL   N+CPLCR E+
Subjt:  CSVCFEDL-NGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL

AT4G12190.1 RING/U-box superfamily protein4.6e-1045.83Show/hide
Query:  CSVCFEDL-NGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL
        CS+C E L +G K +++ ++ C HV+   C+L+WL   N+CPLCR EL
Subjt:  CSVCFEDL-NGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRREL

AT5G37230.1 RING/U-box superfamily protein3.0e-0944.23Show/hide
Query:  DEVGNQCSVCFEDLNGEKEKEVVKIP-CGHVYRKSCILKWLNINNSCPLCRR
        DE    CS+C ED +   +  ++ +P C H++ +SCI KWL    SCPLCRR
Subjt:  DEVGNQCSVCFEDLNGEKEKEVVKIP-CGHVYRKSCILKWLNINNSCPLCRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGAACTATGATGGGATTGGGCGGGAAGATGAGGTGGGAAATCAGTGCAGTGTTTGTTTTGAGGATCTCAACGGGGAAAAAGAAAAGGAGGTGGTCAAAATACC
CTGCGGGCATGTGTATCGTAAGTCATGTATTCTCAAATGGCTTAACATCAACAATTCATGTCCTTTGTGTAGAAGGGAATTAGAAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGAACTATGATGGGATTGGGCGGGAAGATGAGGTGGGAAATCAGTGCAGTGTTTGTTTTGAGGATCTCAACGGGGAAAAAGAAAAGGAGGTGGTCAAAATACC
CTGCGGGCATGTGTATCGTAAGTCATGTATTCTCAAATGGCTTAACATCAACAATTCATGTCCTTTGTGTAGAAGGGAATTAGAAGGATAA
Protein sequenceShow/hide protein sequence
MKENYDGIGREDEVGNQCSVCFEDLNGEKEKEVVKIPCGHVYRKSCILKWLNINNSCPLCRRELEG