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Clc08G02280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase RNF126-like
Genome locationClcChr08:4332401..4332841
RNA-Seq ExpressionClc08G02280
SyntenyClc08G02280
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649756.1 hypothetical protein Csa_012785 [Cucumis sativus]5.6e-4265.07Show/hide
Query:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH
        MS   T S +  IR N   S+ATD QPLQFV+LRL H+ QLV TPS QILQQTSPTLISD L PF L EL+ PPF+S++FL RFLSS+++SAA CDAIF+
Subjt:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH

Query:  KIASFA---LRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV
         I+SFA   L  A  N+N+NFHI A VD VYTHWVDLDP EDAP V
Subjt:  KIASFA---LRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV

KAG6603277.1 E3 ubiquitin-protein ligase-like protein, partial [Cucurbita argyrosperma subsp. sororia]9.5e-3460.58Show/hide
Query:  MSSLTTLSLRYCIRSN-RNGS-VATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAI
        MS+  TLSL+YCI ++ RN + VATD QP+Q+ ELRL + +Q V+  S+Q+LQQT  TLISDAL P  LR+LQHPPFLSH+ +L+FLS+FN+S A+  AI
Subjt:  MSSLTTLSLRYCIRSN-RNGS-VATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAI

Query:  FHKIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLD
        F  IA+FAL LAAG+L+ NFHI   +DFV T WVDLD
Subjt:  FHKIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLD

XP_011650219.1 RING-H2 finger protein ATL16 [Cucumis sativus]4.7e-4973.43Show/hide
Query:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH
        MSS TT S R  IR N NGS AT+ QPLQFVELRLGH+SQLV +PSHQILQQTSP LISD L  FPLREL+ PPF+SH  L RFLSS+N+S A CDAIF 
Subjt:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH

Query:  KIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV
        KI+SFA +L AGNLN NFHI AA+DFVYTHWVDLDP EDA  V
Subjt:  KIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV

XP_022947933.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata]1.6e-3358.46Show/hide
Query:  LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA
        LS +  I+S  NG+VA+D QP+Q +ELRLG+ + L++  S QILQQT  T + DALFPF LR+LQHPPFLS+ ++L+FLSSF++  AACD I+ +I+SFA
Subjt:  LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA

Query:  LRLAAGNLNLNFHITAAVDFVYTHWVDLDP
        L+LAAGN++LNFHI   VD +   WVDLDP
Subjt:  LRLAAGNLNLNFHITAAVDFVYTHWVDLDP

XP_031740500.1 E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus]5.6e-4265.07Show/hide
Query:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH
        MS   T S +  IR N   S+ATD QPLQFV+LRL H+ QLV TPS QILQQTSPTLISD L PF L EL+ PPF+S++FL RFLSS+++SAA CDAIF+
Subjt:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH

Query:  KIASFA---LRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV
         I+SFA   L  A  N+N+NFHI A VD VYTHWVDLDP EDAP V
Subjt:  KIASFA---LRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV

TrEMBL top hitse value%identityAlignment
A0A0A0L3Z2 RING-type domain-containing protein2.7e-4265.07Show/hide
Query:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH
        MS   T S +  IR N   S+ATD QPLQFV+LRL H+ QLV TPS QILQQTSPTLISD L PF L EL+ PPF+S++FL RFLSS+++SAA CDAIF+
Subjt:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH

Query:  KIASFA---LRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV
         I+SFA   L  A  N+N+NFHI A VD VYTHWVDLDP EDAP V
Subjt:  KIASFA---LRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV

A0A0A0LRB0 RING-type domain-containing protein2.3e-4973.43Show/hide
Query:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH
        MSS TT S R  IR N NGS AT+ QPLQFVELRLGH+SQLV +PSHQILQQTSP LISD L  FPLREL+ PPF+SH  L RFLSS+N+S A CDAIF 
Subjt:  MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFH

Query:  KIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV
        KI+SFA +L AGNLN NFHI AA+DFVYTHWVDLDP EDA  V
Subjt:  KIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPV

A0A6J1ES83 uncharacterized protein LOC1114355042.3e-3354.49Show/hide
Query:  MSSLTTLSLRYCIRSN-RNGS-VATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAI
        MS   TLSL+YCI ++ RN + VATD QP+Q+ ELRL + +Q V+  S+Q+LQQT  TLISDAL P  LR+LQHPPFLSH+ +L+FLS+FN+S A+  AI
Subjt:  MSSLTTLSLRYCIRSN-RNGS-VATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAI

Query:  FHKIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLD--------PTEDAPPVSAI
        F  IA+FAL LAAG+L+ NFHI   +D V T WVDLD        P ++  P S +
Subjt:  FHKIASFALRLAAGNLNLNFHITAAVDFVYTHWVDLD--------PTEDAPPVSAI

A0A6J1G7Z5 E3 ubiquitin-protein ligase RNF126-like7.8e-3458.46Show/hide
Query:  LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA
        LS +  I+S  NG+VA+D QP+Q +ELRLG+ + L++  S QILQQT  T + DALFPF LR+LQHPPFLS+ ++L+FLSSF++  AACD I+ +I+SFA
Subjt:  LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA

Query:  LRLAAGNLNLNFHITAAVDFVYTHWVDLDP
        L+LAAGN++LNFHI   VD +   WVDLDP
Subjt:  LRLAAGNLNLNFHITAAVDFVYTHWVDLDP

A0A6J1KYV1 E3 ubiquitin-protein ligase RNF126-like1.3e-3359.23Show/hide
Query:  LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA
        LS +  I+S  NG+VA+  QP+Q +ELRLGH + L++  S QILQQT  T I DALFPF LR+LQHPPFLS+ ++L+FLSSF++  AACD I+ +I+SFA
Subjt:  LSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFA

Query:  LRLAAGNLNLNFHITAAVDFVYTHWVDLDP
        L+LAAGN++LNFHI   VD     WVDLDP
Subjt:  LRLAAGNLNLNFHITAAVDFVYTHWVDLDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCCTTACAACTCTGTCCCTCCGATATTGTATTCGCAGCAACCGCAACGGCAGTGTGGCCACCGACGATCAACCATTGCAATTTGTGGAACTCCGATTAGGGCA
TTACAGCCAATTGGTGGCTACACCTTCCCATCAAATCCTCCAACAAACTTCCCCAACACTAATTTCCGATGCTCTGTTTCCGTTCCCTCTGCGGGAGCTTCAACACCCAC
CATTCCTCTCCCACTACTTCCTCCTCCGCTTTCTCTCTTCCTTCAACCTCTCCGCCGCCGCTTGCGACGCCATCTTCCACAAAATCGCCTCCTTCGCCCTTCGATTGGCC
GCCGGCAACCTCAATCTCAACTTTCACATCACCGCCGCTGTTGATTTTGTGTACACGCACTGGGTGGATCTGGACCCAACAGAAGATGCGCCACCGGTGTCGGCGATATA
G
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCCTTACAACTCTGTCCCTCCGATATTGTATTCGCAGCAACCGCAACGGCAGTGTGGCCACCGACGATCAACCATTGCAATTTGTGGAACTCCGATTAGGGCA
TTACAGCCAATTGGTGGCTACACCTTCCCATCAAATCCTCCAACAAACTTCCCCAACACTAATTTCCGATGCTCTGTTTCCGTTCCCTCTGCGGGAGCTTCAACACCCAC
CATTCCTCTCCCACTACTTCCTCCTCCGCTTTCTCTCTTCCTTCAACCTCTCCGCCGCCGCTTGCGACGCCATCTTCCACAAAATCGCCTCCTTCGCCCTTCGATTGGCC
GCCGGCAACCTCAATCTCAACTTTCACATCACCGCCGCTGTTGATTTTGTGTACACGCACTGGGTGGATCTGGACCCAACAGAAGATGCGCCACCGGTGTCGGCGATATA
G
Protein sequenceShow/hide protein sequence
MSSLTTLSLRYCIRSNRNGSVATDDQPLQFVELRLGHYSQLVATPSHQILQQTSPTLISDALFPFPLRELQHPPFLSHYFLLRFLSSFNLSAAACDAIFHKIASFALRLA
AGNLNLNFHITAAVDFVYTHWVDLDPTEDAPPVSAI