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Clc08G02560 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02560
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase RNF170
Genome locationClcChr08:5024622..5026582
RNA-Seq ExpressionClc08G02560
SyntenyClc08G02560
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR010652 - Domain of unknown function DUF1232
IPR038896 - E3 ubiquitin-protein ligase RNF170


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463070.1 PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]5.3e-3088.89Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S  LS++LQDLPFLLRRLL+ELLNPQRSLPLVIRTRVYIAMVLSVVY VSPIDIIPEALLGLFGLMDDI ILLICFLYIAA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

XP_022932121.1 E3 ubiquitin-protein ligase RNF170-like [Cucurbita moschata]2.6e-2985.56Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S GL+++LQDLPFLLRRLLRELLNPQRSLPLVIR RVY AM LSVVY VSPIDIIPEALLGLFGLMDD FILLICFLY+AA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

XP_022972895.1 E3 ubiquitin-protein ligase RNF170-like [Cucurbita maxima]2.6e-2985.56Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S GL+++LQDLPFLLRRLLRELLNPQRSLPLVIR RVY AM LSVVY VSPIDIIPEALLGLFGLMDD FILLICFLY+AA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

XP_031743956.1 E3 ubiquitin-protein ligase RNF170 isoform X5 [Cucumis sativus]1.5e-2987.78Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S  LS++LQDLPFLLRRLLREL NPQRSLPLVIRTRVYIAMVLSV+Y VSPIDIIPEALLGLFGLMDDI ILLICFLYIAA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

XP_038884720.1 E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida]3.3e-3293.33Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S GLS++LQDLPFLLRRLLRELLNPQRSLPLVIRTRVY AMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

TrEMBL top hitse value%identityAlignment
A0A1S3CIS2 E3 ubiquitin-protein ligase RNF1702.6e-3088.89Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S  LS++LQDLPFLLRRLL+ELLNPQRSLPLVIRTRVYIAMVLSVVY VSPIDIIPEALLGLFGLMDDI ILLICFLYIAA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

A0A2I4FPP7 RING-type E3 ubiquitin transferase1.9e-2574.73Show/hide
Query:  GLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLLHFVFG
        GL +++QDLPFLLRRLLREL++PQRSLPLVIR RVYIAM+LSVVY VSPIDIIPE +LG+ GL+DD+ I+LICFL++AAIYRS+ LHF  G
Subjt:  GLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLLHFVFG

A0A6J1DFH0 E3 ubiquitin-protein ligase RNF1703.7e-2982.61Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLLH
        G  S GL +++QDLPFLLRRLLRELL+PQRSLPLVIR RVYIAMVLSVVY +SPIDIIPEA+LG+FGLMDDIFILLICFLYIAA+YRSVL +
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLLH

A0A6J1EVH0 E3 ubiquitin-protein ligase RNF1701.3e-2985.56Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S GL+++LQDLPFLLRRLLRELLNPQRSLPLVIR RVY AM LSVVY VSPIDIIPEALLGLFGLMDD FILLICFLY+AA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

A0A6J1I9X5 E3 ubiquitin-protein ligase RNF1701.3e-2985.56Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S GL+++LQDLPFLLRRLLRELLNPQRSLPLVIR RVY AM LSVVY VSPIDIIPEALLGLFGLMDD FILLICFLY+AA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

SwissProt top hitse value%identityAlignment
F1MK05 E3 ubiquitin-protein ligase RNF1706.6e-0734.52Show/hide
Query:  LSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        + +++ DLP LLR   RE+ +    L  + R R+ + ++ +  Y +SP+D +PEAL G+ G +DD F++ +  +YI+ +YR V+
Subjt:  LSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Q28DS3 E3 ubiquitin-protein ligase RNF1703.5e-0832.52Show/hide
Query:  KEVVQRLTLLSEATTGNDGRDLLEGFTSW---------GLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFG
        ++ V  +  L +AT   D +++L     +          L  ++ DLP LLR   RE+ +    L  + R R+ + ++ ++ Y VSP+DIIPEA+ GL G
Subjt:  KEVVQRLTLLSEATTGNDGRDLLEGFTSW---------GLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFG

Query:  LMDDIFILLICFLYIAAIYRSVL
         +DD F+L +  +YI+ +YR V+
Subjt:  LMDDIFILLICFLYIAAIYRSVL

Q5PPX5 E3 ubiquitin-protein ligase RNF1701.8e-0934.15Show/hide
Query:  KEVVQRLTLLSEATTGNDGRDLLEGFTSW---------GLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFG
        ++ V  L  L  AT   D +++L+  T +          L  ++ DLP LLR   RE+ +    L  + R R+ + ++ +++Y VSP+DIIPEAL G+ G
Subjt:  KEVVQRLTLLSEATTGNDGRDLLEGFTSW---------GLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFG

Query:  LMDDIFILLICFLYIAAIYRSVL
         +DD+F+L +  +YI+ +YR V+
Subjt:  LMDDIFILLICFLYIAAIYRSVL

Q7SZN2 E3 ubiquitin-protein ligase RNF1701.0e-0737.78Show/hide
Query:  LSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLLHFVFG
        L  +L+D+P LLR   RE+ +    L  + R R+ + +  ++ Y VSP+D +PE +LGL G +DD F++L+ F+YI+ +YR V+   + G
Subjt:  LSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLLHFVFG

Q96K19 E3 ubiquitin-protein ligase RNF1706.6e-0734.52Show/hide
Query:  LSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        + +++ DLP LLR   RE+ +    L  + R R+ + ++ +  Y +SP+D +PEAL G+ G +DD F++ +  +YI+ +YR V+
Subjt:  LSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

Arabidopsis top hitse value%identityAlignment
AT1G22510.1 RING/U-box protein with domain of unknown function (DUF 1232)2.6e-2767.78Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S GL +++QDLPFLLRRLLRE+++PQR+LPLVIR RVYIA++LS +Y +SPIDIIPE +LG+ GL+DD+ I LICFL++AA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232)2.6e-2767.78Show/hide
Query:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        G  S GL +++QDLPFLLRRLLRE+++PQR+LPLVIR RVYIA++LS +Y +SPIDIIPE +LG+ GL+DD+ I LICFL++AA+YRSVL
Subjt:  GFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL

AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232)4.5e-2768.48Show/hide
Query:  LEGFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL
        L G  S  L +++QDLPFLLRRLLRE+++PQR+LPLVIR RVYIAM+LS VY +SPIDIIPE +LG+ GL+DD+ I LICFL++AA+YRSVL
Subjt:  LEGFTSWGLSKQLQDLPFLLRRLLRELLNPQRSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGGCCTTCAGCTGTGCAGCTCCACAGGGTTTTGGTCTTCCCTTTGATATTCCAACCTCTTAGAGCTTCTGCAGTCCAATCCTCAATTCTGTCGGGAAGACAACA
TAGCTCCCCCGCTTCATTAAAAAATAAAGTTCCAACTACCTGCTGCCAAAGGGCAGTGGAGAAAGAGGTGGTCCAAAGACTCACTCTGCTCTCTGAAGCAACAACAGGAA
ATGATGGACGAGATCTATTGGAGGGCTTCACATCCTGGGGGCTGAGTAAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAG
AGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATT
TGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTGTTGCTTCATTTTGTGTTCGGGAATGTGAAGCTTGAGAACC
ACAAAAACTGTGTTTGGAAAATAGCCACTGCAGATGTCTGCTCGCGTTTATCACCTGAGTTTACACACGTAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGGCCTTCAGCTGTGCAGCTCCACAGGGTTTTGGTCTTCCCTTTGATATTCCAACCTCTTAGAGCTTCTGCAGTCCAATCCTCAATTCTGTCGGGAAGACAACA
TAGCTCCCCCGCTTCATTAAAAAATAAAGTTCCAACTACCTGCTGCCAAAGGGCAGTGGAGAAAGAGGTGGTCCAAAGACTCACTCTGCTCTCTGAAGCAACAACAGGAA
ATGATGGACGAGATCTATTGGAGGGCTTCACATCCTGGGGGCTGAGTAAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAG
AGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATT
TGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTGTTGCTTCATTTTGTGTTCGGGAATGTGAAGCTTGAGAACC
ACAAAAACTGTGTTTGGAAAATAGCCACTGCAGATGTCTGCTCGCGTTTATCACCTGAGTTTACACACGTAGTTTAG
Protein sequenceShow/hide protein sequence
MWRPSAVQLHRVLVFPLIFQPLRASAVQSSILSGRQHSSPASLKNKVPTTCCQRAVEKEVVQRLTLLSEATTGNDGRDLLEGFTSWGLSKQLQDLPFLLRRLLRELLNPQ
RSLPLVIRTRVYIAMVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLLHFVFGNVKLENHKNCVWKIATADVCSRLSPEFTHVV