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Clc08G02570 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02570
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase RNF170
Genome locationClcChr08:5039558..5042684
RNA-Seq ExpressionClc08G02570
SyntenyClc08G02570
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR017907 - Zinc finger, RING-type, conserved site
IPR038896 - E3 ubiquitin-protein ligase RNF170


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463070.1 PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]1.4e-4992.78Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        MDGPPAGDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRR I+LLVPSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

XP_031743949.1 DNA mismatch repair protein MLH1 isoform X1 [Cucumis sativus]1.5e-4890.72Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        MDGPP GDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP  PCKCPLCRR I+LLVPSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

XP_031743956.1 E3 ubiquitin-protein ligase RNF170 isoform X5 [Cucumis sativus]1.5e-4890.72Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        MDGPP GDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP  PCKCPLCRR I+LLVPSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

XP_038884720.1 E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida]1.2e-5093.81Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        MDGPP GDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRRQI+LLVPSEVSPIQQ DPEV RVLNNIRTYNRHFGGNSTG SQ
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

XP_038884722.1 DNA mismatch repair protein MLH1-like isoform X3 [Benincasa hispida]1.2e-5093.81Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        MDGPP GDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRRQI+LLVPSEVSPIQQ DPEV RVLNNIRTYNRHFGGNSTG SQ
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

TrEMBL top hitse value%identityAlignment
A0A067JVY1 E3 ubiquitin-protein ligase RNF1706.4e-3769.31Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKG
        MDGPPA D CS+CHGRF  PCQANCSHWFCG CIMLVW HGS  QPCKCPLCRRQI+LLVPSE S  ++ +PEVA +L  + TYNR FGG +TG  Q   
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKG

Query:  D
        D
Subjt:  D

A0A1S3CIS2 E3 ubiquitin-protein ligase RNF1706.6e-5092.78Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        MDGPPAGDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRR I+LLVPSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

A0A6J1DFH0 E3 ubiquitin-protein ligase RNF1706.0e-4379.21Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKG
        MDGPPAGD CSICHG FN PCQANCSHWFCG CIMLVWDHGS  QPCKCPLCRRQI+LLVPSE S  QQ +PEVAR+LNNIRTYN HFG NS G  Q   
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKG

Query:  D
        D
Subjt:  D

A0A6J1EVH0 E3 ubiquitin-protein ligase RNF1709.6e-4989.69Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        MDGPPAGDICSICHGRFNTPCQANCSHWFCG+CIMLVWDHGSP QPCKCPLCRRQI+LLVPSE S  QQ DPEVARVLNNIR YNRHFGGNSTG +Q
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

A0A6J1I9X5 E3 ubiquitin-protein ligase RNF1701.1e-4788.66Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        MDGPPAGDICSICHGRFNTPCQANCSHWFCG+CIMLVWDHGS  QPCKCPLCRRQI+LLVPSE S  QQ DPEVARVLNNIR YNRHFGGNSTG +Q
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

SwissProt top hitse value%identityAlignment
A0JNG4 RING finger protein 2072.4e-0430.26Show/hide
Query:  MDGPPAGD-------ICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ
        ++GP A D       +C +CH ++  PC  +C H FC  C+      G       CPLC+ Q  +  PS + P+ +
Subjt:  MDGPPAGD-------ICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ

F1MK05 E3 ubiquitin-protein ligase RNF1704.9e-1037.04Show/hide
Query:  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGG
        C IC  + + P + NC H FCG CI+  W +GS      CP+CR+ ++LL+P  V        +V  +  +I  YNR F G
Subjt:  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGG

Q3V3A7 RING finger protein 2071.8e-0432.79Show/hide
Query:  ICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ
        +C +CHG++  PC  +C H FC  C+      G       CPLC+ Q  +  PS + P+ +
Subjt:  ICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ

Q8CBG9 E3 ubiquitin-protein ligase RNF1706.5e-1037.04Show/hide
Query:  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGG
        C IC  + + P + NC H FCG CI+  W +GS      CP+CR+ ++LL+       Q  D  V R+  ++  YNR F G
Subjt:  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGG

Q96K19 E3 ubiquitin-protein ligase RNF1708.4e-1038.27Show/hide
Query:  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGG
        C IC  + + P + NC H FCG CI+  W +GS      CP+CR+ ++LL+       Q  D  V R+  +I  YNR F G
Subjt:  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGG

Arabidopsis top hitse value%identityAlignment
AT1G22510.1 RING/U-box protein with domain of unknown function (DUF 1232)4.1e-3662.38Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKG
        M+ PP  ++CSICHG FN PCQ+NCSHWFCG CIMLVW HGS  +PCKCPLCRR ISLLVPSE +   + D  V+ VL+++ TYNR FGG S+G  Q   
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKG

Query:  D
        D
Subjt:  D

AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232)1.0e-1859.15Show/hide
Query:  GKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKGD
        G CIMLVW HGS  +PCKCPLCRR ISLLVPSE +   + D  V+ VL+++ TYNR FGG S+G  Q   D
Subjt:  GKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKGD

AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232)2.7e-3563.37Show/hide
Query:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKG
        M+ PP  D+CSICH  F  PCQANCSHWFCG CIMLVW HGS  QPCKCPLCRR ISLLVPSE +   + D  V  VL N+ TYNR FGG S+   Q   
Subjt:  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKG

Query:  D
        D
Subjt:  D

AT4G33940.1 RING/U-box superfamily protein1.4e-2346.88Show/hide
Query:  DGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ
        + PP  D+C IC G F  PC+ NC HW+CG CI+  W++ +  +PCKCP+C R I+ L P E S  ++ + EV  VL+ +R YNR F G  TGF Q
Subjt:  DGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGAAAGTGTATAATGCTTGT
CTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGG
TTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAGGGGAAAGGGGATAATGGAGCACCTTGCGGAGAGCCCCTC
GAGGCAAGAATATCTTCCCTCAATGTCAACGATACCAAGCAAAATACCATGAACAAGCAGAATGTAAGCAAACGCAATCCTCCAGCCACTTCAAGAGGGCTGGGTTCTCT
CCTCTATAGCACCCAGCTAACATTCTTCTCCAAGAAGAACTCTAGCAATGATCTTATAGAGGTGAGTGGTGAGGCTAATGGCCAAAACCAGGATTTGGCGTCAATCTTGT
TGGGGATGAGGCAGATGCAGGTTCTGTTGATGCTAGCATTAGTAATATCATTCTCAAGAAAACCATTGAACACCCTCTTGTTGTCAACCTTGAGAGTGTTCCAGGAGATT
TTCAGTGAGGAGACTCACCCCTGTTCTGGAAAGGATTTCAATGATTGTGGTCTTTCTACGTTTTGCAGCTACACGACTATGGAAGAAGGTGGAAATTTCATCACCATCAG
CTCACTAATTGGATTCACAGCGCTTTCTCCACATAATCATTTCATTTGCAGCAATGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGAAAGTGTATAATGCTTGT
CTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGG
TTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAGGGGAAAGGGGATAATGGAGCACCTTGCGGAGAGCCCCTC
GAGGCAAGAATATCTTCCCTCAATGTCAACGATACCAAGCAAAATACCATGAACAAGCAGAATGTAAGCAAACGCAATCCTCCAGCCACTTCAAGAGGGCTGGGTTCTCT
CCTCTATAGCACCCAGCTAACATTCTTCTCCAAGAAGAACTCTAGCAATGATCTTATAGAGGTGAGTGGTGAGGCTAATGGCCAAAACCAGGATTTGGCGTCAATCTTGT
TGGGGATGAGGCAGATGCAGGTTCTGTTGATGCTAGCATTAGTAATATCATTCTCAAGAAAACCATTGAACACCCTCTTGTTGTCAACCTTGAGAGTGTTCCAGGAGATT
TTCAGTGAGGAGACTCACCCCTGTTCTGGAAAGGATTTCAATGATTGTGGTCTTTCTACGTTTTGCAGCTACACGACTATGGAAGAAGGTGGAAATTTCATCACCATCAG
CTCACTAATTGGATTCACAGCGCTTTCTCCACATAATCATTTCATTTGCAGCAATGGATAA
Protein sequenceShow/hide protein sequence
MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQGKGDNGAPCGEPL
EARISSLNVNDTKQNTMNKQNVSKRNPPATSRGLGSLLYSTQLTFFSKKNSSNDLIEVSGEANGQNQDLASILLGMRQMQVLLMLALVISFSRKPLNTLLLSTLRVFQEI
FSEETHPCSGKDFNDCGLSTFCSYTTMEEGGNFITISSLIGFTALSPHNHFICSNG