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Clc08G02590 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02590
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase RNF170
Genome locationClcChr08:5086650..5087178
RNA-Seq ExpressionClc08G02590
SyntenyClc08G02590
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_007020133.1 PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X1 [Theobroma cacao]1.0e-0463.04Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
XP_007020134.1 PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X3 [Theobroma cacao]1.0e-0463.04Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
XP_017981892.1 PREDICTED: E3 ubiquitin-protein ligase RNF170 isoform X2 [Theobroma cacao]1.0e-0463.04Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
XP_021288892.1 E3 ubiquitin-protein ligase RNF170-like [Herrania umbratica]1.0e-0463.04Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
XP_038681488.1 E3 ubiquitin-protein ligase RNF170-like [Tripterygium wilfordii]1.2e-0567.39Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        ME  LV DI SICHG FNTP QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
TrEMBL top hitse value%identityAlignment
A0A061FKC6 E3 ubiquitin-protein ligase RNF1704.8e-0563.04Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
A0A061FS55 E3 ubiquitin-protein ligase RNF1704.8e-0563.04Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
A0A6A1UWG3 RING-type domain-containing protein8.2e-0558.7Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        M+G L  D  S+CHG FN P QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
A0A6J1AQX1 E3 ubiquitin-protein ligase RNF1704.8e-0563.04Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        MEG  V D  SICHG FN P QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
A0A7J7CF81 E3 ubiquitin-protein ligase RNF1705.7e-0667.39Show/hide
Query:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        ME  LV DI SICHG FNTP QANCSH WFCGN    C  LV H G
Subjt:  MEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22510.1 RING/U-box protein with domain of unknown function (DUF 1232)2.8e-0556.41Show/hide
Query:  DIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        ++ SICHG FN P Q+NCSH WFCGN    C  LV   G
Subjt:  DIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232)1.1e-0456.41Show/hide
Query:  DIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG
        D+ SICH  F  P QANCSH WFCGN    C  LV   G
Subjt:  DIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATATGGAGGGCTCCCTTGTGGGCGATATCTATTCCATTTGCCATGGAATATTCAACACCCCTTACCAAGCTAATTGCTCGCACTGGTGGTTTTGCGGCAACAG
AAACTCACGGTGTGCGAGATTGGTCAAGCACAGTGGCTACAGAACACCCGATCGGACGCAAACCAGACGAGATCAATCGGACAGAAACTCTGGGCTGAGCGCCACAAAGT
CTGGATGGTCGAACCAGCGAAAGGACGGCGTTGCGGCGTGCACGGCGCAAGCGACAGCAGCCGCGACGTGGGTTGAAGACCGGCGGCTGTTGCAGGGAGAGAGAAAAATG
GAAGGGACCAGCGGCCAGCCTTCACGAGAAGACAACCTTGAGGATTGGTTGAAGATTGTTTGGGCAAGAAAGGCCACATCAAAGAAAGTCATTACAAGGGAAGAAGCTGG
AAAGAAGAAAGTCATTTCAAGCAACAAAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAATATGGAGGGCTCCCTTGTGGGCGATATCTATTCCATTTGCCATGGAATATTCAACACCCCTTACCAAGCTAATTGCTCGCACTGGTGGTTTTGCGGCAACAG
AAACTCACGGTGTGCGAGATTGGTCAAGCACAGTGGCTACAGAACACCCGATCGGACGCAAACCAGACGAGATCAATCGGACAGAAACTCTGGGCTGAGCGCCACAAAGT
CTGGATGGTCGAACCAGCGAAAGGACGGCGTTGCGGCGTGCACGGCGCAAGCGACAGCAGCCGCGACGTGGGTTGAAGACCGGCGGCTGTTGCAGGGAGAGAGAAAAATG
GAAGGGACCAGCGGCCAGCCTTCACGAGAAGACAACCTTGAGGATTGGTTGAAGATTGTTTGGGCAAGAAAGGCCACATCAAAGAAAGTCATTACAAGGGAAGAAGCTGG
AAAGAAGAAAGTCATTTCAAGCAACAAAGTTTAG
Protein sequenceShow/hide protein sequence
MDNMEGSLVGDIYSICHGIFNTPYQANCSHWWFCGNRNSRCARLVKHSGYRTPDRTQTRRDQSDRNSGLSATKSGWSNQRKDGVAACTAQATAAATWVEDRRLLQGERKM
EGTSGQPSREDNLEDWLKIVWARKATSKKVITREEAGKKKVISSNKV