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Clc08G02610 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02610
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationClcChr08:5163044..5163334
RNA-Seq ExpressionClc08G02610
SyntenyClc08G02610
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033842.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]2.6e-1150.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + +      I  D D  + VGE+F YDT++EE E D TT F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

KAA0040954.1 transposase [Cucumis melo var. makuwa]2.6e-1149.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + ++     I  D D  + VGE+F YDT++E+ E D TT+F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

KAA0057608.1 transposase [Cucumis melo var. makuwa]3.3e-1150.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + +      I  D D  + VGE+F YDT++EE E D TT F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

TYK20303.1 transposase [Cucumis melo var. makuwa]2.6e-1149.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + ++     I  D D  + VGE+F YDT++E+ E D TT+F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

XP_038885835.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]9.1e-1760.42Show/hide
Query:  MGSVVEQCLRLLPPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVKESEIDVYLLEANVKNESDFDIL
        M +VVEQC R L  + S      SGS+TT N PIVS S+TI  DCDPT+KVGE+F YDT+  + E D+TT F + SEID+YLLEANVKNE DF+IL
Subjt:  MGSVVEQCLRLLPPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVKESEIDVYLLEANVKNESDFDIL

TrEMBL top hitse value%identityAlignment
A0A5A7SRK8 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.2e-1150.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + +      I  D D  + VGE+F YDT++EE E D TT F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

A0A5A7TBW8 Transposase1.2e-1149.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + ++     I  D D  + VGE+F YDT++E+ E D TT+F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

A0A5D3CR68 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.6e-1150.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + +      I  D D  + VGE+F YDT++EE E D TT F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

A0A5D3CXI1 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.6e-1150.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + +      I  D D  + VGE+F YDT++EE E D TT F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

A0A5D3D9R3 Transposase1.2e-1149.5Show/hide
Query:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI
        MG+VVEQC R L        SGS  G S +STT+ + ++     I  D D  + VGE+F YDT++E+ E D TT+F +  SEID+YLLEANV+ E DFDI
Subjt:  MGSVVEQCLRLL----PPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVK-ESEIDVYLLEANVKNESDFDI

Query:  L
        L
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGTGTAGTGGAGCAATGTTTGAGACTACTACCTCCGCAACCAAGTGGTAGTGGTAGTGGACCTAGTGGTAGTAGTACTACTACTAATAAACCAATTGTCTCAGA
CTCCGATACCATAAGAAATGATTGTGATCCAACTAAAAAGGTGGGTGAAGAGTTTGAGTATGATACGGTGATTGAAGAGTTGGAATATGATGATACTACAACTTTTGTTA
AGGAGTCAGAGATTGATGTTTATTTGTTGGAAGCTAATGTTAAGAATGAAAGTGATTTTGACATACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGTGTAGTGGAGCAATGTTTGAGACTACTACCTCCGCAACCAAGTGGTAGTGGTAGTGGACCTAGTGGTAGTAGTACTACTACTAATAAACCAATTGTCTCAGA
CTCCGATACCATAAGAAATGATTGTGATCCAACTAAAAAGGTGGGTGAAGAGTTTGAGTATGATACGGTGATTGAAGAGTTGGAATATGATGATACTACAACTTTTGTTA
AGGAGTCAGAGATTGATGTTTATTTGTTGGAAGCTAATGTTAAGAATGAAAGTGATTTTGACATACTATAG
Protein sequenceShow/hide protein sequence
MGSVVEQCLRLLPPQPSGSGSGPSGSSTTTNKPIVSDSDTIRNDCDPTKKVGEEFEYDTVIEELEYDDTTTFVKESEIDVYLLEANVKNESDFDIL