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Clc08G02817 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G02817
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionpentatricopeptide repeat-containing protein At1g19720-like
Genome locationClcChr08:5539058..5539818
RNA-Seq ExpressionClc08G02817
SyntenyClc08G02817
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064811.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.9e-2988.61Show/hide
Query:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI
        +MQH+VAVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES NDLANVLSSDNFD GVLLHGI
Subjt:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI

XP_004146805.1 pentatricopeptide repeat-containing protein At1g19720 [Cucumis sativus]4.1e-2888.46Show/hide
Query:  MQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI
        MQHK+AVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES NDLANVLSSDN D GVLLHGI
Subjt:  MQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI

XP_008445371.1 PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis melo]4.9e-2988.61Show/hide
Query:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI
        +MQH+VAVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES NDLANVLSSDNFD GVLLHGI
Subjt:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI

XP_023546745.1 pentatricopeptide repeat-containing protein At1g19720-like [Cucurbita pepo subsp. pepo]5.2e-2380.77Show/hide
Query:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHG
        +MQ K+AVELFCQML EGIKPSS TFSIL P LA R DL TRRQLHSYIIKSQ + SCNDLANVLSS+ FDGGVLLHG
Subjt:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHG

XP_038884429.1 pentatricopeptide repeat-containing protein At1g19720-like [Benincasa hispida]1.4e-2884.81Show/hide
Query:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI
        +MQ K+AVELFCQML EG+KPSS TFSILLP LAE+ DLK RRQLHSYIIKS++LESCNDLANVLSSDNFDGGVLLHGI
Subjt:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI

TrEMBL top hitse value%identityAlignment
A0A0A0KFW8 Uncharacterized protein2.0e-2888.46Show/hide
Query:  MQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI
        MQHK+AVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES NDLANVLSSDN D GVLLHGI
Subjt:  MQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI

A0A1S3BDB0 pentatricopeptide repeat-containing protein At1g19720-like2.4e-2988.61Show/hide
Query:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI
        +MQH+VAVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES NDLANVLSSDNFD GVLLHGI
Subjt:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI

A0A5A7VGH4 Pentatricopeptide repeat-containing protein2.4e-2988.61Show/hide
Query:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI
        +MQH+VAVELFCQML EGIKPSSATFSILLP L+ER DLK RRQLHSYIIKSQHLES NDLANVLSSDNFD GVLLHGI
Subjt:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHGI

A0A6J1BQ73 pentatricopeptide repeat-containing protein At1g19720-like1.6e-1470.59Show/hide
Query:  QHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNF
        Q KVA+ELFC+ML EGIKPSS T SIL P L    DLK RRQLHSYI KSQ LE CNDLANV S   F
Subjt:  QHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNF

A0A6J1K3Z4 pentatricopeptide repeat-containing protein At1g19720-like1.4e-2176.92Show/hide
Query:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHG
        VMQ K+AVELFCQML EGIKPSS +FSILLP LA R DL  RRQLHSYIIKSQ +ESC+DL+ VLSS+ FDGGV+LHG
Subjt:  VMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSSDNFDGGVLLHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G08490.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.6e-0433.87Show/hide
Query:  AVELFCQMLEEG-IKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSS
        A +LF  ++ +G + P S T   +LPV A+  DL + +++HSYI++  +L     + N L S
Subjt:  AVELFCQMLEEG-IKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLESCNDLANVLSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTAGGGTTTTTCCCTTTGTTCGAATCTTTATCAATAATCGAAATGCATCTTGCTATCTGTTGTTGGACGAGAAACGCTTGATTGTTAACCAGAATGTTCCGGT
TCTTCTTCCTGTTATCGATTGTACTCTCTGCCGAACGCTAGAATTTGAAGTAATGCAGCACAAAGTAGCAGTTGAACTCTTCTGTCAAATGCTAGAAGAAGGCATAAAAC
CAAGTTCAGCTACCTTTTCGATACTTCTCCCTGTCTTAGCTGAAAGGGAAGATTTGAAAACAAGAAGACAGCTACATTCCTATATCATCAAGAGTCAGCACCTTGAATCA
TGCAACGACCTTGCAAATGTCTTAAGTTCAGACAATTTTGATGGAGGAGTTTTGCTTCATGGAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTTAGGGTTTTTCCCTTTGTTCGAATCTTTATCAATAATCGAAATGCATCTTGCTATCTGTTGTTGGACGAGAAACGCTTGATTGTTAACCAGAATGTTCCGGT
TCTTCTTCCTGTTATCGATTGTACTCTCTGCCGAACGCTAGAATTTGAAGTAATGCAGCACAAAGTAGCAGTTGAACTCTTCTGTCAAATGCTAGAAGAAGGCATAAAAC
CAAGTTCAGCTACCTTTTCGATACTTCTCCCTGTCTTAGCTGAAAGGGAAGATTTGAAAACAAGAAGACAGCTACATTCCTATATCATCAAGAGTCAGCACCTTGAATCA
TGCAACGACCTTGCAAATGTCTTAAGTTCAGACAATTTTGATGGAGGAGTTTTGCTTCATGGAATATAA
Protein sequenceShow/hide protein sequence
MDLRVFPFVRIFINNRNASCYLLLDEKRLIVNQNVPVLLPVIDCTLCRTLEFEVMQHKVAVELFCQMLEEGIKPSSATFSILLPVLAEREDLKTRRQLHSYIIKSQHLES
CNDLANVLSSDNFDGGVLLHGI