; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc08G03140 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G03140
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein of unknown function (DUF3511)
Genome locationClcChr08:7315405..7317308
RNA-Seq ExpressionClc08G03140
SyntenyClc08G03140
Gene Ontology termsNA
InterPro domainsIPR021899 - Protein of unknown function DUF3511


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039168.1 Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa]3.7e-3797.7Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSSTSGEFGFQTRSNSYNFNGPT KATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

KGN45893.1 hypothetical protein Csa_005289 [Cucumis sativus]1.3e-3798.85Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

XP_022930185.1 uncharacterized protein LOC111436683 [Cucurbita moschata]2.7e-3594.25Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

XP_022974055.1 uncharacterized protein LOC111472683 [Cucurbita maxima]1.1e-3391.95Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT  ATGFSTS DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRY L
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

XP_023536368.1 uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo]2.7e-3594.25Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

TrEMBL top hitse value%identityAlignment
A0A0A0K8Y3 Uncharacterized protein6.2e-3898.85Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

A0A2P5BV48 Uncharacterized protein1.2e-2878.16Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKS+SF +YSS+ SGEFGF+ RSNSYNFNGP  K +GF TS+DPELQRK+RIASYNVF ME KVKSSV+NSFKWIK+KFSDIRYG+
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

A0A5A7T8F8 Mediator of RNA polymerase II transcription subunit 81.8e-3797.7Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSSTSGEFGFQTRSNSYNFNGPT KATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

A0A6J1EWA0 uncharacterized protein LOC1114366831.3e-3594.25Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT KATGFSTS DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

A0A6J1ICY9 uncharacterized protein LOC1114726835.4e-3491.95Show/hide
Query:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        MEKSKSF KYSSS SGEF FQTRSNSYNFNGPT  ATGFSTS DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRY L
Subjt:  MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G72720.1 Protein of unknown function (DUF3511)1.7e-0841.46Show/hide
Query:  YSSSTSGEFGFQT----RSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        YS+ST   +   T     SN+ +      K  GF    + E+QRK+R+ASYNV+ +E +VK S+K SFKW K   S+  YGL
Subjt:  YSSSTSGEFGFQT----RSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

AT2G47480.1 Protein of unknown function (DUF3511)2.8e-0651.22Show/hide
Query:  ADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDI
        +D E++RK+RIA Y  + +E KVKS++KN F+WIK K   I
Subjt:  ADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDI

AT3G05725.1 Protein of unknown function (DUF3511)1.6e-0645.45Show/hide
Query:  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL
        DPE++RKRR+A Y +++ E K+K +++ S+KWIK + S I +G+
Subjt:  DPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGL

AT4G09890.1 Protein of unknown function (DUF3511)2.7e-1753.85Show/hide
Query:  MEKSKSFSKYSSS-TSGEFGF-QTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGLRF
        M+ SKS+++YSSS ++ EFG+ Q RSNSYNFNGP         + DPE++RK+R+ASYN+F  E K+KS++KNSFKWIK KFS     +R+
Subjt:  MEKSKSFSKYSSS-TSGEFGF-QTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGLRF

AT5G11970.1 Protein of unknown function (DUF3511)5.1e-0837.65Show/hide
Query:  YSSSTSGEF-----GFQTRSNSYNFNGPTAKATGFSTS---ADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYG
        Y  +  G+F      + TR N+  ++    K+   S S    DPELQRK+R+ASY ++ +E KVK S +NSF+W+K +++ + YG
Subjt:  YSSSTSGEF-----GFQTRSNSYNFNGPTAKATGFSTS---ADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAGCAAATCATTTTCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAAC
TGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCA
AGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAGCAAATCATTTTCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAAC
TGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCA
AGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA
Protein sequenceShow/hide protein sequence
MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGLRFMNYEDSLPKMCH