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Clc08G03370 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G03370
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr08:8426542..8437601
RNA-Seq ExpressionClc08G03370
SyntenyClc08G03370
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-1057.14Show/hide
Query:  SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFC
        SI++NILLC+ELV GYH    K RC LKVD QKAYDS++WDFLFGL+   S  ++   ++S C
Subjt:  SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFC

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]6.9e-1232.8Show/hide
Query:  STKGRVVRNGISSLIDGSSQRISSSIDIFSTIVD--YFTTLEVLCQ----PVTHDEVHTMLFSMGSGKALGPD---------------------------
        S + R+ RN + SL+D    R     ++   I D   F   E  CQ    P++ +EV  +LFSM SGKA GPD                           
Subjt:  STKGRVVRNGISSLIDGSSQRISSSIDIFSTIVD--YFTTLEVLCQ----PVTHDEVHTMLFSMGSGKALGPD---------------------------

Query:  ----------------------------------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGL
                                                SI++NILLC+ELV GYH    K RC LKVD QKAYDS++WDFLFGL
Subjt:  ----------------------------------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGL

KAE8726370.1 Kinesin-13A [Hibiscus syriacus]7.7e-1137.4Show/hide
Query:  EVLCQPVTHDEVHTMLFSMGSGKALGPD--------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDV
        E+L + VT++E+   +FS G+ KALGPD              SIV N LL +E+V+GY R     RC LK+D QKA+DSI+WDF+  +        +V  
Subjt:  EVLCQPVTHDEVHTMLFSMGSGKALGPD--------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDV

Query:  FLSFCEGGLSIRYIPSWNVVAIG
        ++  C    + RY  ++N   IG
Subjt:  FLSFCEGGLSIRYIPSWNVVAIG

TYK26658.1 uncharacterized protein E5676_scaffold313G003080 [Cucumis melo var. makuwa]4.1e-1233.15Show/hide
Query:  STKGRVVRNGISSLIDGSSQRISSSIDIFSTIVD--YFTTLEVLCQ----PVTHDEVHTMLFSMGSGKALGPD---------------------------
        S + R+ RN + SL+D    R     ++   I D   F   E  CQ    P++ +EV  +LFSM SGKA GPD                           
Subjt:  STKGRVVRNGISSLIDGSSQRISSSIDIFSTIVD--YFTTLEVLCQ----PVTHDEVHTMLFSMGSGKALGPD---------------------------

Query:  --------------------------------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGL
                                              SI++NILLC+ELV GYH    K RC LKVD QKAYDS++WDFLFGL
Subjt:  --------------------------------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGL

XP_039057772.1 uncharacterized protein LOC120201183 [Hibiscus syriacus]3.4e-1130.98Show/hide
Query:  RNGISSLIDGSSQRISSSIDIFSTIVDYFTTL-----------------------------EVLCQPVTHDEVHTMLFSMGSGKALGPD-----------
        R  I  L++    R+ S  D+   ++DYFT L                             E+L + VT++E+   +FS G+ KALGPD           
Subjt:  RNGISSLIDGSSQRISSSIDIFSTIVDYFTTL-----------------------------EVLCQPVTHDEVHTMLFSMGSGKALGPD-----------

Query:  ---SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFCEGGLSIRYIPSWNVVAIG
           SIV N LL +E+V+GY R     RC LK+D QKA+DSI+WDF+  +        +V  ++  C    + RY  ++N   IG
Subjt:  ---SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFCEGGLSIRYIPSWNVVAIG

TrEMBL top hitse value%identityAlignment
A0A5A7UP65 Reverse transcriptase4.8e-1157.14Show/hide
Query:  SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFC
        SI++NILLC+ELV GYH    K RC LKVD QKAYDS++WDFLFGL+   S  ++   ++S C
Subjt:  SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFC

A0A5A7V3Z0 Reverse transcriptase domain-containing protein3.4e-1232.8Show/hide
Query:  STKGRVVRNGISSLIDGSSQRISSSIDIFSTIVD--YFTTLEVLCQ----PVTHDEVHTMLFSMGSGKALGPD---------------------------
        S + R+ RN + SL+D    R     ++   I D   F   E  CQ    P++ +EV  +LFSM SGKA GPD                           
Subjt:  STKGRVVRNGISSLIDGSSQRISSSIDIFSTIVD--YFTTLEVLCQ----PVTHDEVHTMLFSMGSGKALGPD---------------------------

Query:  ----------------------------------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGL
                                                SI++NILLC+ELV GYH    K RC LKVD QKAYDS++WDFLFGL
Subjt:  ----------------------------------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGL

A0A5D3D7P6 Reverse transcriptase4.8e-1157.14Show/hide
Query:  SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFC
        SI++NILLC+ELV GYH    K RC LKVD QKAYDS++WDFLFGL+   S  ++   ++S C
Subjt:  SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFC

A0A5D3DT20 Reverse transcriptase domain-containing protein2.0e-1233.15Show/hide
Query:  STKGRVVRNGISSLIDGSSQRISSSIDIFSTIVD--YFTTLEVLCQ----PVTHDEVHTMLFSMGSGKALGPD---------------------------
        S + R+ RN + SL+D    R     ++   I D   F   E  CQ    P++ +EV  +LFSM SGKA GPD                           
Subjt:  STKGRVVRNGISSLIDGSSQRISSSIDIFSTIVD--YFTTLEVLCQ----PVTHDEVHTMLFSMGSGKALGPD---------------------------

Query:  --------------------------------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGL
                                              SI++NILLC+ELV GYH    K RC LKVD QKAYDS++WDFLFGL
Subjt:  --------------------------------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGL

A0A6A3CAX5 Kinesin-13A3.7e-1137.4Show/hide
Query:  EVLCQPVTHDEVHTMLFSMGSGKALGPD--------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDV
        E+L + VT++E+   +FS G+ KALGPD              SIV N LL +E+V+GY R     RC LK+D QKA+DSI+WDF+  +        +V  
Subjt:  EVLCQPVTHDEVHTMLFSMGSGKALGPD--------------SIVDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDV

Query:  FLSFCEGGLSIRYIPSWNVVAIG
        ++  C    + RY  ++N   IG
Subjt:  FLSFCEGGLSIRYIPSWNVVAIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTTTCCATTGTCTACCGTGGTACTCAAAATCAGGGAGGTATGCTCGTGGACTTAGCCGTGGGAATGGCTTCAAGCAAGTGGCTAGGCATGAAGCTTGAGAAGGA
GGTGTTGGCGAGACAAGTCTCGTTAGTCTCTAATAGGCAGACAAGGCGAATGATGCAGACTGTCAACAAGGACACGATGCATGCATCGGGTAGGTTGGAGATCGACCCCC
AATTGGCGTGCATAGCTGAAGACGCACACATGCCCTGCCTTTTGAGGTTAATAGATGGACCCCAATACCGAATGACACGGAGAAGGGATATGGGCAGCCTAAACATTGTG
ATATGGGACCCCAATGGTAAAGGACATGAGAAGCTAAGGTTATTTGACGTTTGGTGTGTCGAGATTACTCCACCCCAACTAAGGTTGTTTTCGACGTTGAGTCGTGTTGA
GCTTTGCTCCACCTCAACTAAGGGTCGTGTGGTTAGGAATGGTATATCCTCATTGATTGATGGTTCTAGTCAGAGGATTTCCTCTAGTATTGATATTTTCTCCACTATTG
TCGACTATTTTACTACTCTTGAGGTGTTATGTCAGCCTGTTACTCATGATGAAGTTCATACTATGTTATTTTCGATGGGCAGTGGTAAGGCGCTGGGTCCAGACAGTATT
GTGGATAATATTCTTCTTTGTAAAGAGCTGGTGAGGGGTTACCATAGGATTGTTAGTAAGAGTCGGTGCTTGCTGAAGGTGGATTTCCAGAAGGCCTATGACTCTATCCA
TTGGGATTTCCTTTTTGGCCTACGATTTTGTCCATCAATTCGAATCAGGGTTGATGTTTTTCTTTCATTTTGTGAGGGTGGTTTGAGTATTCGCTACATTCCTTCTTGGA
ACGTTGTTGCTATTGGGAAGCTTTTGTGGCTTATTCTAATTAGTTATGGATCCATGGATCCAATTGACCTTTTCACGCAAGCCTATTCTTCAACAGCTAGGATTGTGTTA
CCTAGCTCCCTTGTTGCTGGATTTTCAACCCAATCTACAGATTCCCCTAATTTCTTCATTTTCAGGCTTGGATTTTGCTCATCTTCAATCGTTGATGGTGGTGTACGTTG
TGGTCTTGGTTATCTTTTAAGTGGCATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACTTTCCATTGTCTACCGTGGTACTCAAAATCAGGGAGGTATGCTCGTGGACTTAGCCGTGGGAATGGCTTCAAGCAAGTGGCTAGGCATGAAGCTTGAGAAGGA
GGTGTTGGCGAGACAAGTCTCGTTAGTCTCTAATAGGCAGACAAGGCGAATGATGCAGACTGTCAACAAGGACACGATGCATGCATCGGGTAGGTTGGAGATCGACCCCC
AATTGGCGTGCATAGCTGAAGACGCACACATGCCCTGCCTTTTGAGGTTAATAGATGGACCCCAATACCGAATGACACGGAGAAGGGATATGGGCAGCCTAAACATTGTG
ATATGGGACCCCAATGGTAAAGGACATGAGAAGCTAAGGTTATTTGACGTTTGGTGTGTCGAGATTACTCCACCCCAACTAAGGTTGTTTTCGACGTTGAGTCGTGTTGA
GCTTTGCTCCACCTCAACTAAGGGTCGTGTGGTTAGGAATGGTATATCCTCATTGATTGATGGTTCTAGTCAGAGGATTTCCTCTAGTATTGATATTTTCTCCACTATTG
TCGACTATTTTACTACTCTTGAGGTGTTATGTCAGCCTGTTACTCATGATGAAGTTCATACTATGTTATTTTCGATGGGCAGTGGTAAGGCGCTGGGTCCAGACAGTATT
GTGGATAATATTCTTCTTTGTAAAGAGCTGGTGAGGGGTTACCATAGGATTGTTAGTAAGAGTCGGTGCTTGCTGAAGGTGGATTTCCAGAAGGCCTATGACTCTATCCA
TTGGGATTTCCTTTTTGGCCTACGATTTTGTCCATCAATTCGAATCAGGGTTGATGTTTTTCTTTCATTTTGTGAGGGTGGTTTGAGTATTCGCTACATTCCTTCTTGGA
ACGTTGTTGCTATTGGGAAGCTTTTGTGGCTTATTCTAATTAGTTATGGATCCATGGATCCAATTGACCTTTTCACGCAAGCCTATTCTTCAACAGCTAGGATTGTGTTA
CCTAGCTCCCTTGTTGCTGGATTTTCAACCCAATCTACAGATTCCCCTAATTTCTTCATTTTCAGGCTTGGATTTTGCTCATCTTCAATCGTTGATGGTGGTGTACGTTG
TGGTCTTGGTTATCTTTTAAGTGGCATCTAG
Protein sequenceShow/hide protein sequence
MALSIVYRGTQNQGGMLVDLAVGMASSKWLGMKLEKEVLARQVSLVSNRQTRRMMQTVNKDTMHASGRLEIDPQLACIAEDAHMPCLLRLIDGPQYRMTRRRDMGSLNIV
IWDPNGKGHEKLRLFDVWCVEITPPQLRLFSTLSRVELCSTSTKGRVVRNGISSLIDGSSQRISSSIDIFSTIVDYFTTLEVLCQPVTHDEVHTMLFSMGSGKALGPDSI
VDNILLCKELVRGYHRIVSKSRCLLKVDFQKAYDSIHWDFLFGLRFCPSIRIRVDVFLSFCEGGLSIRYIPSWNVVAIGKLLWLILISYGSMDPIDLFTQAYSSTARIVL
PSSLVAGFSTQSTDSPNFFIFRLGFCSSSIVDGGVRCGLGYLLSGI