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Clc08G03425 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G03425
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr08:9105996..9106292
RNA-Seq ExpressionClc08G03425
SyntenyClc08G03425
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.4e-1753.25Show/hide
Query:  ASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK
        A+KH W   EN  LVECL+  V+ G WRVDNGTF+ G+L  V +++++++P S+IQV+PNLES+V+ LK+ Y+ IAK
Subjt:  ASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-1543.75Show/hide
Query:  RASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAKCW
        RA +H+W  EE   LVECL+  V  G W+ DNGTF+PG+LA ++RM+ +++PG  ++ +  ++ +++TLKR + AIA+ W
Subjt:  RASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAKCW

KAA0066605.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-1549.38Show/hide
Query:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK
        S +RA KH W  EE   LVECLV  V +G WR +NGTF+PG+LA + RM+ +++P ++IQ SP ++ +V++LK+ Y AIA+
Subjt:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.6e-1651.85Show/hide
Query:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK
        S +RA KH W  EE    VECLV  V SG WR DNGTFQPG+LA + RM+ +++PG++IQ S  ++  V++LK+ Y AIA+
Subjt:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]4.6e-1646.91Show/hide
Query:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK
        S +RA KH+W  EE   LVEC+V  V +G W+ DNGTF+PG+LA +LRM+  ++PG ++  +  ++ +++TLKR+Y AIA+
Subjt:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.2e-1651.85Show/hide
Query:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK
        S +RA KH W  EE    VECLV  V SG WR DNGTFQPG+LA + RM+ +++PG++IQ S  ++  V++LK+ Y AIA+
Subjt:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK

A0A5A7TF70 Putative nuclease HARBI12.6e-1753.25Show/hide
Query:  ASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK
        A+KH W   EN  LVECL+  V+ G WRVDNGTF+ G+L  V +++++++P S+IQV+PNLES+V+ LK+ Y+ IAK
Subjt:  ASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK

A0A5A7TGP1 Retrotransposon protein1.4e-1543.75Show/hide
Query:  RASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAKCW
        RA +H+W  EE   LVECL+  V  G W+ DNGTF+PG+LA ++RM+ +++PG  ++ +  ++ +++TLKR + AIA+ W
Subjt:  RASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAKCW

A0A5A7U0H7 Retrotransposon protein2.2e-1651.85Show/hide
Query:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK
        S +RA KH W  EE    VECLV  V SG WR DNGTFQPG+LA + RM+ +++PG++IQ S  ++  V++LK+ Y AIA+
Subjt:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK

A0A5D3CQS4 Retrotransposon protein8.4e-1649.38Show/hide
Query:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK
        S +RA KH W  EE   LVECLV  V +G WR +NGTF+PG+LA + RM+ +++P ++IQ SP ++ +V++LK+ Y AIA+
Subjt:  SRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCACCCGGATCACGCGCAAGAGCTTCAAAACATATTTGGATGGATGAAGAGAACAGAATCCTGGTGGAGTGTTTGGTTCTGTGTGTGCAGTCTGGACACTGGCG
AGTTGATAACGGAACTTTTCAACCTGGATTCCTAGCAAATGTACTACGGATGTTGCAGCAAAGGGTTCCAGGGAGTTCCATACAAGTAAGCCCAAATTTGGAGTCCAAGG
TCAGGACGTTGAAGAGAAACTACAGCGCGATTGCTAAATGTTGGGCTCAGGATCTAGTGGGTTTGGTTCGAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCACCCGGATCACGCGCAAGAGCTTCAAAACATATTTGGATGGATGAAGAGAACAGAATCCTGGTGGAGTGTTTGGTTCTGTGTGTGCAGTCTGGACACTGGCG
AGTTGATAACGGAACTTTTCAACCTGGATTCCTAGCAAATGTACTACGGATGTTGCAGCAAAGGGTTCCAGGGAGTTCCATACAAGTAAGCCCAAATTTGGAGTCCAAGG
TCAGGACGTTGAAGAGAAACTACAGCGCGATTGCTAAATGTTGGGCTCAGGATCTAGTGGGTTTGGTTCGAATGTAG
Protein sequenceShow/hide protein sequence
MEAPGSRARASKHIWMDEENRILVECLVLCVQSGHWRVDNGTFQPGFLANVLRMLQQRVPGSSIQVSPNLESKVRTLKRNYSAIAKCWAQDLVGLVRM