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Clc08G03460 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G03460
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr08:9455326..9455872
RNA-Seq ExpressionClc08G03460
SyntenyClc08G03460
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051690.1 uncharacterized protein E6C27_scaffold60G00710 [Cucumis melo var. makuwa]5.2e-2050.43Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI------VDEFTKNRVRSSRDPRSFEQ
        +V MDDFD+V GMEFLLE +V PMPLANCL++    P++V  D++Q +G+ +ISA+  KKGLSR+EPTFMAI +       +   K  +R  R+      
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI------VDEFTKNRVRSSRDPRSFEQ

Query:  NAGFIRPVKAPLWGP
        NAGFIRP KAP   P
Subjt:  NAGFIRPVKAPLWGP

TYJ97923.1 uncharacterized protein E5676_scaffold234G00110 [Cucumis melo var. makuwa]5.2e-2050.43Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI------VDEFTKNRVRSSRDPRSFEQ
        +V MDDFD+V GMEFLLE +V PMPLANCL++    P++V  D++Q +G+ +ISA+  KKGLSR+EPTFMAI +       +   K  +R  R+      
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI------VDEFTKNRVRSSRDPRSFEQ

Query:  NAGFIRPVKAPLWGP
        NAGFIRP KAP   P
Subjt:  NAGFIRPVKAPLWGP

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]2.6e-1962.2Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFTKNR
        +V MDDFD+V GMEFL+EHKV PMPLA C+IVT  +PT+V+  IKQ  G+ +ISAL  KKGL+REEPTFMAI +V++  + R
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFTKNR

XP_023524533.1 uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]3.3e-1962.03Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFT
        +V MDDFD+V GMEFLLEHKV PMPLA CL++T RNPT++   IKQ   + +ISA+  K+GL+REEPTFMAI +++E T
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFT

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]3.3e-1962.03Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFT
        +V MDDFD+V GMEFLLEHKV PMPLA CL++T RNPT++   IKQ   + +ISA+  K+GL+REEPTFMAI +++E T
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFT

TrEMBL top hitse value%identityAlignment
A0A5A7U960 Reverse transcriptase domain-containing protein2.5e-2050.43Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI------VDEFTKNRVRSSRDPRSFEQ
        +V MDDFD+V GMEFLLE +V PMPLANCL++    P++V  D++Q +G+ +ISA+  KKGLSR+EPTFMAI +       +   K  +R  R+      
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI------VDEFTKNRVRSSRDPRSFEQ

Query:  NAGFIRPVKAPLWGP
        NAGFIRP KAP   P
Subjt:  NAGFIRPVKAPLWGP

A0A5A7UVQ2 Retrotrans_gag domain-containing protein3.6e-1944.12Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI---------VDEFTKNRVRSSRDP--
        +V MDDFD+V GMEFLLEH+V PMPLA CL++T   P++V  D++Q +G+ +ISA+  KKGLSR+EPTFMAI +         V +     +   RDP  
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI---------VDEFTKNRVRSSRDP--

Query:  --------------RSFEQ--NAGFIRPVKAPLWGP
                      +  ++  NAGFIRP KAP   P
Subjt:  --------------RSFEQ--NAGFIRPVKAPLWGP

A0A5A7VDT8 Reverse transcriptase2.8e-1968.92Show/hide
Query:  MDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDE
        MDDFD+V GMEFLL+HK  PMPLA CL+VT  N T+V   IKQL+GV +IS L  K G SREEPTFMAIS+VDE
Subjt:  MDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDE

A0A5D3BF81 Reverse transcriptase domain-containing protein2.5e-2050.43Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI------VDEFTKNRVRSSRDPRSFEQ
        +V MDDFD+V GMEFLLE +V PMPLANCL++    P++V  D++Q +G+ +ISA+  KKGLSR+EPTFMAI +       +   K  +R  R+      
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISI------VDEFTKNRVRSSRDPRSFEQ

Query:  NAGFIRPVKAPLWGP
        NAGFIRP KAP   P
Subjt:  NAGFIRPVKAPLWGP

A0A6J1D906 Reverse transcriptase1.2e-1962.2Show/hide
Query:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFTKNR
        +V MDDFD+V GMEFL+EHKV PMPLA C+IVT  +PT+V+  IKQ  G+ +ISAL  KKGL+REEPTFMAI +V++  + R
Subjt:  MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFTKNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGCATGGATGACTTTGACATTGTGCGCGGGATGGAGTTCCTTTTGGAACATAAGGTCAACCCCATGCCCTTAGCCAACTGCCTAATTGTCACAAGAAGAAATCC
CACACTAGTCTCAGTAGATATAAAACAACTTAACGGAGTGGGGCTGATTTCTGCCCTTCTGCCGAAGAAAGGTCTCAGCCGGGAAGAACCCACCTTCATGGCCATCTCGA
TTGTTGATGAGTTTACTAAAAACCGAGTTCGTTCCTCTAGAGATCCAAGAAGTTTTGAACAAAATGCGGGATTTATACGCCCTGTGAAAGCCCCTTTATGGGGCCCTAGT
CCTGTTCCAAAAGAAGAAAGACGAGTCACTACAATTATGCATCGACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGCATGGATGACTTTGACATTGTGCGCGGGATGGAGTTCCTTTTGGAACATAAGGTCAACCCCATGCCCTTAGCCAACTGCCTAATTGTCACAAGAAGAAATCC
CACACTAGTCTCAGTAGATATAAAACAACTTAACGGAGTGGGGCTGATTTCTGCCCTTCTGCCGAAGAAAGGTCTCAGCCGGGAAGAACCCACCTTCATGGCCATCTCGA
TTGTTGATGAGTTTACTAAAAACCGAGTTCGTTCCTCTAGAGATCCAAGAAGTTTTGAACAAAATGCGGGATTTATACGCCCTGTGAAAGCCCCTTTATGGGGCCCTAGT
CCTGTTCCAAAAGAAGAAAGACGAGTCACTACAATTATGCATCGACTATAG
Protein sequenceShow/hide protein sequence
MVCMDDFDIVRGMEFLLEHKVNPMPLANCLIVTRRNPTLVSVDIKQLNGVGLISALLPKKGLSREEPTFMAISIVDEFTKNRVRSSRDPRSFEQNAGFIRPVKAPLWGPS
PVPKEERRVTTIMHRL