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Clc08G03620 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G03620
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationClcChr08:9935774..9936357
RNA-Seq ExpressionClc08G03620
SyntenyClc08G03620
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0044599 - AP-5 adaptor complex (cellular component)
GO:0005488 - binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047682.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]9.6e-1847.33Show/hide
Query:  SNRKEKERAQLGDSSAIIAKEVKTEVNEYSQDRSKFKK--------------------FLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLP
        S+R  +    +GDS      E KT+ NE + +R+KFKK                    FL IKQ+T VEEY NLFDKLVAPL  L ++V++ET MNGL P
Subjt:  SNRKEKERAQLGDSSAIIAKEVKTEVNEYSQDRSKFKK--------------------FLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLP

Query:  WNKTEVECWEPIGLTSMMKIAQLVENRELLR
        W K EV    P GL  MMKIAQ+VENRE+++
Subjt:  WNKTEVECWEPIGLTSMMKIAQLVENRELLR

KAA0050721.1 methionine aminopeptidase 1B [Cucumis melo var. makuwa]3.3e-1850.89Show/hide
Query:  EVKTEVNEYSQDRSKFK---------------------KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMK
        E KTE+ E S DRSKFK                     KFL IKQE  VEEY NLFDKLVAPL  + ++V+K+T MNGL+PW + EV    P  L  MM+
Subjt:  EVKTEVNEYSQDRSKFK---------------------KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMK

Query:  IAQLVENRELLR
        +AQLVEN+EL+R
Subjt:  IAQLVENRELLR

KAA0053087.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-1866.22Show/hide
Query:  KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR
        +FLAIKQ+T VEEY NLFDKLVAPLP L   VL+ETLMNGL PW K  +ECWE +GL  MM +AQ ++NRE++R
Subjt:  KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR

KAA0053502.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]6.6e-1967.57Show/hide
Query:  KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR
        +FLAIKQET VEEY N FDKLVAP+P L  +VL+ET MNGL PW K +VEC EPIGLT MMK+A  ++NRE++R
Subjt:  KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR

TYK24006.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]9.6e-1855.91Show/hide
Query:  AKEVKTEVNEYSQDRSKFKKFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR
        A   K+   E S+D +   KFL IKQET VEEY NLFDKLVAPL  + + V+++T MNGLLPW + EV    P GL  MM++AQLVENRE++R
Subjt:  AKEVKTEVNEYSQDRSKFKKFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR

TrEMBL top hitse value%identityAlignment
A0A5A7TW32 Ty3-gypsy retroelement transposase4.6e-1847.33Show/hide
Query:  SNRKEKERAQLGDSSAIIAKEVKTEVNEYSQDRSKFKK--------------------FLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLP
        S+R  +    +GDS      E KT+ NE + +R+KFKK                    FL IKQ+T VEEY NLFDKLVAPL  L ++V++ET MNGL P
Subjt:  SNRKEKERAQLGDSSAIIAKEVKTEVNEYSQDRSKFKK--------------------FLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLP

Query:  WNKTEVECWEPIGLTSMMKIAQLVENRELLR
        W K EV    P GL  MMKIAQ+VENRE+++
Subjt:  WNKTEVECWEPIGLTSMMKIAQLVENRELLR

A0A5A7UAX7 Methionine aminopeptidase1.6e-1850.89Show/hide
Query:  EVKTEVNEYSQDRSKFK---------------------KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMK
        E KTE+ E S DRSKFK                     KFL IKQE  VEEY NLFDKLVAPL  + ++V+K+T MNGL+PW + EV    P  L  MM+
Subjt:  EVKTEVNEYSQDRSKFK---------------------KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMK

Query:  IAQLVENRELLR
        +AQLVEN+EL+R
Subjt:  IAQLVENRELLR

A0A5A7UCK4 Ty3-gypsy retroelement transposase3.2e-1967.57Show/hide
Query:  KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR
        +FLAIKQET VEEY N FDKLVAP+P L  +VL+ET MNGL PW K +VEC EPIGLT MMK+A  ++NRE++R
Subjt:  KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR

A0A5D3DK67 Transposon Tf2-9 polyprotein4.6e-1855.91Show/hide
Query:  AKEVKTEVNEYSQDRSKFKKFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR
        A   K+   E S+D +   KFL IKQET VEEY NLFDKLVAPL  + + V+++T MNGLLPW + EV    P GL  MM++AQLVENRE++R
Subjt:  AKEVKTEVNEYSQDRSKFKKFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR

A0A5D3E235 Ty3-gypsy retrotransposon protein9.3e-1966.22Show/hide
Query:  KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR
        +FLAIKQ+T VEEY NLFDKLVAPLP L   VL+ETLMNGL PW K  +ECWE +GL  MM +AQ ++NRE++R
Subjt:  KFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENRELLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAATCGAAAGGAGAAGGAGCGAGCGCAATTAGGAGATTCTTCGGCGATAATTGCAAAAGAGGTGAAAACAGAGGTCAACGAATACAGTCAAGATCGTAGCAAGTT
CAAGAAGTTCTTAGCGATTAAACAAGAAACAATGGTGGAGGAGTATTGGAATCTCTTCGATAAGTTGGTTGCACCGTTGCCGCAATTGTCTGATCAGGTGTTAAAAGAAA
CCCTCATGAATGGGCTTTTGCCTTGGAACAAGACAGAGGTGGAGTGTTGGGAGCCTATTGGGCTTACAAGCATGATGAAGATAGCGCAATTAGTTGAGAATAGGGAGTTG
TTACGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTAATCGAAAGGAGAAGGAGCGAGCGCAATTAGGAGATTCTTCGGCGATAATTGCAAAAGAGGTGAAAACAGAGGTCAACGAATACAGTCAAGATCGTAGCAAGTT
CAAGAAGTTCTTAGCGATTAAACAAGAAACAATGGTGGAGGAGTATTGGAATCTCTTCGATAAGTTGGTTGCACCGTTGCCGCAATTGTCTGATCAGGTGTTAAAAGAAA
CCCTCATGAATGGGCTTTTGCCTTGGAACAAGACAGAGGTGGAGTGTTGGGAGCCTATTGGGCTTACAAGCATGATGAAGATAGCGCAATTAGTTGAGAATAGGGAGTTG
TTACGCTAG
Protein sequenceShow/hide protein sequence
MSNRKEKERAQLGDSSAIIAKEVKTEVNEYSQDRSKFKKFLAIKQETMVEEYWNLFDKLVAPLPQLSDQVLKETLMNGLLPWNKTEVECWEPIGLTSMMKIAQLVENREL
LR