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Clc08G03630 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G03630
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3-gypsy retroelement transposase
Genome locationClcChr08:9936544..9936813
RNA-Seq ExpressionClc08G03630
SyntenyClc08G03630
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0043229 - intracellular organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031986.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.3e-2158.54Show/hide
Query:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPY
        M+K W   DQGFL+ECRA+EGG++ A+ YGID V  I +++PT+L K+  +F WP  LPP R IEHHIHLKK    VNVRPY
Subjt:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPY

KAA0045136.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]1.8e-1953.93Show/hide
Query:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE
        M+K WE +DQGFLVECRA+EG V +A +Y     + +D ++P LL+K   VFEW E LPP+R IEH+IHLK+   PVNVRPY  A+ ++
Subjt:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE

KAA0055708.1 protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa]4.8e-2053.93Show/hide
Query:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE
        M+K WE +DQGFLVECR +EG V++A +Y  ++   +D A+P LL KF  VFEWP+ LPP+R IEHHIHLK+    VNVR Y  A  ++
Subjt:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE

TYK02790.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]3.0e-2261.45Show/hide
Query:  MVKMWESKDQGFLVECRAME-GGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPY
        M+K W   DQ FLVECRA+E G ++MA++YGIDEV  ++E++P +LEKF  VF+W E+LPPRR IEHHIHLKK+   +NVRPY
Subjt:  MVKMWESKDQGFLVECRAME-GGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPY

TYK09954.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-2053.93Show/hide
Query:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE
        M+K WE +DQGFLVECR +EG V++A +Y  ++   +D A+P LL KF  VFEWP+ LPP+R IEHHIHLK+    VNVR Y  A  ++
Subjt:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE

TrEMBL top hitse value%identityAlignment
A0A5A7SPQ8 Transposon Ty3-I Gag-Pol polyprotein3.6e-2158.54Show/hide
Query:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPY
        M+K W   DQGFL+ECRA+EGG++ A+ YGID V  I +++PT+L K+  +F WP  LPP R IEHHIHLKK    VNVRPY
Subjt:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPY

A0A5A7TSN2 Ty3-gypsy retroelement transposase8.8e-2053.93Show/hide
Query:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE
        M+K WE +DQGFLVECRA+EG V +A +Y     + +D ++P LL+K   VFEW E LPP+R IEH+IHLK+   PVNVRPY  A+ ++
Subjt:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE

A0A5A7UKW4 Protochlorophyllide-dependent translocon component 522.3e-2053.93Show/hide
Query:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE
        M+K WE +DQGFLVECR +EG V++A +Y  ++   +D A+P LL KF  VFEWP+ LPP+R IEHHIHLK+    VNVR Y  A  ++
Subjt:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE

A0A5D3BUJ5 Ty3-gypsy retroelement transposase1.4e-2261.45Show/hide
Query:  MVKMWESKDQGFLVECRAME-GGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPY
        M+K W   DQ FLVECRA+E G ++MA++YGIDEV  ++E++P +LEKF  VF+W E+LPPRR IEHHIHLKK+   +NVRPY
Subjt:  MVKMWESKDQGFLVECRAME-GGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPY

A0A5D3CFG5 Ty3/gypsy retrotransposon protein2.3e-2053.93Show/hide
Query:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE
        M+K WE +DQGFLVECR +EG V++A +Y  ++   +D A+P LL KF  VFEWP+ LPP+R IEHHIHLK+    VNVR Y  A  ++
Subjt:  MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGATGTGGGAGTCAAAAGATCAGGGTTTCCTTGTCGAGTGTAGAGCTATGGAAGGGGGTGTGTCGATGGCGAAGTGGTATGGTATCGACGAAGTTGCTAATAT
CGACGAGGCATTACCTACATTATTGGAGAAGTTTGGAAAAGTATTTGAATGGCCTGAAGAATTACCACCAAGGAGGGAGATAGAGCATCATATACACTTGAAGAAGGAAG
CTACCCCCGTCAATGTTAGGCCATATATATGCGCATCACCAGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGATGTGGGAGTCAAAAGATCAGGGTTTCCTTGTCGAGTGTAGAGCTATGGAAGGGGGTGTGTCGATGGCGAAGTGGTATGGTATCGACGAAGTTGCTAATAT
CGACGAGGCATTACCTACATTATTGGAGAAGTTTGGAAAAGTATTTGAATGGCCTGAAGAATTACCACCAAGGAGGGAGATAGAGCATCATATACACTTGAAGAAGGAAG
CTACCCCCGTCAATGTTAGGCCATATATATGCGCATCACCAGAAGAGTGA
Protein sequenceShow/hide protein sequence
MVKMWESKDQGFLVECRAMEGGVSMAKWYGIDEVANIDEALPTLLEKFGKVFEWPEELPPRREIEHHIHLKKEATPVNVRPYICASPEE