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Clc08G03780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G03780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem II CP47 reaction center protein-like
Genome locationClcChr08:11445753..11446951
RNA-Seq ExpressionClc08G03780
SyntenyClc08G03780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056500.1 photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa]2.1e-1059.42Show/hide
Query:  SFILPFGCVIKRSSNYRVTAVRLALPIPNFLNIDSDIKLILAPKSHKACPTSILPIEHDNVKLLESFIF
        S I PFGCV+  S+N   T V  A PIP+FL ID DIKLILAP+ H A P SI  IEH  VKLL S  F
Subjt:  SFILPFGCVIKRSSNYRVTAVRLALPIPNFLNIDSDIKLILAPKSHKACPTSILPIEHDNVKLLESFIF
TrEMBL top hitse value%identityAlignment
A0A5D3DZH8 Photosystem II CP47 reaction center protein-like1.0e-1059.42Show/hide
Query:  SFILPFGCVIKRSSNYRVTAVRLALPIPNFLNIDSDIKLILAPKSHKACPTSILPIEHDNVKLLESFIF
        S I PFGCV+  S+N   T V  A PIP+FL ID DIKLILAP+ H A P SI  IEH  VKLL S  F
Subjt:  SFILPFGCVIKRSSNYRVTAVRLALPIPNFLNIDSDIKLILAPKSHKACPTSILPIEHDNVKLLESFIF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCTTGCATTGAGCCACTTAATAATTTTCTTTACCACTTCTTTCATGGCTGGTTTGAGCCTGTGTTGCCTTTCAATAGATCCCTCCTTTCATTCTTCTAAACGAAT
CTTATGCATGCTACGAGAGATTGATTCCCCAGGAAATGATAATGACAAGTTGTTATCATCTCCTAGATATGCATATTTCAGGTGTGCAGGGAGGACTTTTAACTCCAGAG
AAGGGTGTTCTTCAAGGGATGGTTTTGTTTTAGCGATTTCTCAATTGCTCAGGGAAGATGAATTTATCAACCTGGCCCAGTCCTTTATTTTACCTTTTGGATGTGTAATT
AAGCGGTCGAGCAACTACAGGGTGACTGCAGTACGTCTTGCCTTGCCAATACCTAACTTCTTGAATATTGACAGCGACATCAAGTTGATACTTGCCCCTAAGTCACATAA
AGCTTGCCCAACATCCATTCTCCCTATTGAGCATGACAATGTGAAACTTCTAGAATCCTTCATCTTTGCAGTGATTTTGTTTTTAAACAATGCACTGCACTCCTGCATTA
GAGTGACTGTTTCAAATTCTCCTAACTGCCTTTTCTTCGACATGATGTCATTAAGGAATTTCACATAG
mRNA sequenceShow/hide mRNA sequence
GAGGAAACAAGAAAACTCATTGGTGGCGAGATTTAGCTCCTTGTAATCCATGCAAATTCGTCATCAAGTCATGGTTCTAGTGGGGATCAGCTCGTCATTGCTGTTAGCAA
CCGTAATCATACCACCCTTCTTTGGCACTTATTGCACAGGGTTTGTCTAGCTACTATCGAAAATTGGATAAATGACCCTTGCATTGAGCCACTTAATAATTTTCTTTACC
ACTTCTTTCATGGCTGGTTTGAGCCTGTGTTGCCTTTCAATAGATCCCTCCTTTCATTCTTCTAAACGAATCTTATGCATGCTACGAGAGATTGATTCCCCAGGAAATGA
TAATGACAAGTTGTTATCATCTCCTAGATATGCATATTTCAGGTGTGCAGGGAGGACTTTTAACTCCAGAGAAGGGTGTTCTTCAAGGGATGGTTTTGTTTTAGCGATTT
CTCAATTGCTCAGGGAAGATGAATTTATCAACCTGGCCCAGTCCTTTATTTTACCTTTTGGATGTGTAATTAAGCGGTCGAGCAACTACAGGGTGACTGCAGTACGTCTT
GCCTTGCCAATACCTAACTTCTTGAATATTGACAGCGACATCAAGTTGATACTTGCCCCTAAGTCACATAAAGCTTGCCCAACATCCATTCTCCCTATTGAGCATGACAA
TGTGAAACTTCTAGAATCCTTCATCTTTGCAGTGATTTTGTTTTTAAACAATGCACTGCACTCCTGCATTAGAGTGACTGTTTCAAATTCTCCTAACTGCCTTTTCTTCG
ACATGATGTCATTAAGGAATTTCACATAG
Protein sequenceShow/hide protein sequence
MTLALSHLIIFFTTSFMAGLSLCCLSIDPSFHSSKRILCMLREIDSPGNDNDKLLSSPRYAYFRCAGRTFNSREGCSSRDGFVLAISQLLREDEFINLAQSFILPFGCVI
KRSSNYRVTAVRLALPIPNFLNIDSDIKLILAPKSHKACPTSILPIEHDNVKLLESFIFAVILFLNNALHSCIRVTVSNSPNCLFFDMMSLRNFT