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Clc08G03910 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc08G03910
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationClcChr08:11514465..11516962
RNA-Seq ExpressionClc08G03910
SyntenyClc08G03910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041779.1 uncharacterized protein E6C27_scaffold67G001380 [Cucumis melo var. makuwa]7.3e-1630.53Show/hide
Query:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRV-------FPPSDNFTAEPHASIRATQDIDAFPAF
        L+ KA   K + N+ P+YPQL+REF  NLP +F    S DY+   I   + +          E  V        P ++           +T  ++  PA 
Subjt:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRV-------FPPSDNFTAEPHASIRATQDIDAFPAF

Query:  FLTYSHL-------------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFN
         L+  +              +   SISA   T LYQI      N G FI NQ+ RH+G   VK P+ FLRL   ++L  +  +L  ++ P   P  +  +
Subjt:  FLTYSHL-------------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFN

Query:  YKLYQGKHVPDLVHIGVAEVDVGPSR
        ++L+QG HVPD+ H      DV P+R
Subjt:  YKLYQGKHVPDLVHIGVAEVDVGPSR

XP_038882438.1 uncharacterized protein LOC120073709 [Benincasa hispida]3.0e-2537.56Show/hide
Query:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRVFPPSDNFTAEPHASIRATQDIDAFPAFFLTYSHL
        LL+K   V   LNL  YYP+L+ EF+ NLP Q G   SP++ K  +     +          +R V    +N T   H                 + S L
Subjt:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRVFPPSDNFTAEPHASIRATQDIDAFPAFFLTYSHL

Query:  AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFNYKLYQGKHVPDLVHIGVAEV
         F ++              G+ FNY  +++NQ+ RHIG  A K PLCF RLI GI LAQ  DIL   +    VP A+ F+Y+LYQGKHVPDL+HI +   
Subjt:  AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFNYKLYQGKHVPDLVHIGVAEV

Query:  DVGPSRVFLDTPC
        ++GP R FL T C
Subjt:  DVGPSRVFLDTPC

XP_038887050.1 uncharacterized protein LOC120077220 [Benincasa hispida]1.9e-2437.2Show/hide
Query:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRK-------------------------NSISDSRVLSDFNRRRTARERRVFPPSDNFTA
        L +K   V  VLN  PYYPQLV EF+ NL  QF + GS DYRK                         N       +SD     T R +R +P  D    
Subjt:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRK-------------------------NSISDSRVLSDFNRRRTARERRVFPPSDNFTA

Query:  EPHASIRATQDIDAFPAFFLTYSHLAFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPH
            S  + + +         +   +   S+S      LYQIGT   FNYG+FILNQ+ RHI  QA K P    R+  G   A        S+ P  +P 
Subjt:  EPHASIRATQDIDAFPAFFLTYSHLAFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPH

Query:  ALFFNYKLYQGKHVPDLVHIGVAEVDVGPSRVFLDTPCGKKIVHVLANES
        AL F+Y LY+ KHVP LVHI V   + GP   FL TPC KK +H LAN+S
Subjt:  ALFFNYKLYQGKHVPDLVHIGVAEVDVGPSRVFLDTPCGKKIVHVLANES

XP_038887175.1 uncharacterized protein LOC120077362 [Benincasa hispida]5.6e-4042.91Show/hide
Query:  LLLKRSSPSKLKTASRSWVLLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRK-NSISDSRVLSDFNRRRTARERRVFPPSDNFTAEPHAS
        ++++R    + +   +   LL+K + V  +LNL+PYYP LVREF+ NL  QF +VG+ DYRK + +SD            +R+      S  +       
Subjt:  LLLKRSSPSKLKTASRSWVLLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRK-NSISDSRVLSDFNRRRTARERRVFPPSDNFTAEPHAS

Query:  IRATQDIDAFPAFFLTYSHLAFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFN
        I      + FP+     SH      +S    + LYQI TG+ FNYGV   NQ+ RHIG QA K   CF RLICGI+LAQ P++LL S+ P  +   L F+
Subjt:  IRATQDIDAFPAFFLTYSHLAFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFN

Query:  YKLYQGKHVPDLVHIGVAEVDVGPSRVFLDTPCGKKIVHVLANESKE
        Y+LYQGKHVPDLVH  V   + GP+R FL TPC KK++H+LANESK+
Subjt:  YKLYQGKHVPDLVHIGVAEVDVGPSRVFLDTPCGKKIVHVLANESKE

XP_038904247.1 uncharacterized protein LOC120090596 [Benincasa hispida]1.1e-1633.51Show/hide
Query:  VKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNS-------ISDSRVLSDFNRRRTARERRVFPPSDNFTAEPHASIRATQDIDAFPAFFLTYSHL
        +K V+NL P+YPQL+RE   NLP +F    +PDY+K         IS + + +   R ++       P  + F AE    I          A +   +H 
Subjt:  VKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNS-------ISDSRVLSDFNRRRTARERRVFPPSDNFTAEPHASIRATQDIDAFPAFFLTYSHL

Query:  AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFNYKLYQGKHVPDLVH
        +   S+S    + LYQIG  S+FN+ VF+ NQ+ RH    A+K P+   R+  G++L+Q P IL P++ P  +P  L   YK+++G +  D VH
Subjt:  AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFNYKLYQGKHVPDLVH

TrEMBL top hitse value%identityAlignment
A0A1S3C400 uncharacterized protein LOC1034962207.9e-1632.86Show/hide
Query:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYR-------KNSISDSRVLSDFNRRRTARERRVFPPSDNFTAEPHASIRATQDIDAFPAF
        L+ KA   K + ++ P+YPQL+REF  NLP  F    SP+Y+       K++IS + V++ F     +     F PS + T +  A   + + + ++P  
Subjt:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYR-------KNSISDSRVLSDFNRRRTARERRVFPPSDNFTAEPHASIRATQDIDAFPAF

Query:  FLTYSHLAFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFNYKLYQGKHVPDLV
         +  + L+   +I     T LY+I      + G FI NQ+ RH+G   VK P+   R   G++L  +  IL  S+ P   P  L  +Y+L+QG HVPD+ 
Subjt:  FLTYSHLAFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFNYKLYQGKHVPDLV

Query:  HIGVAEVDVGPSR
        H      DV PSR
Subjt:  HIGVAEVDVGPSR

A0A5A7TK74 Uncharacterized protein3.5e-1630.53Show/hide
Query:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRV-------FPPSDNFTAEPHASIRATQDIDAFPAF
        L+ KA   K + N+ P+YPQL+REF  NLP +F    S DY+   I   + +          E  V        P ++           +T  ++  PA 
Subjt:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRV-------FPPSDNFTAEPHASIRATQDIDAFPAF

Query:  FLTYSHL-------------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFN
         L+  +              +   SISA   T LYQI      N G FI NQ+ RH+G   VK P+ FLRL   ++L  +  +L  ++ P   P  +  +
Subjt:  FLTYSHL-------------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFN

Query:  YKLYQGKHVPDLVHIGVAEVDVGPSR
        ++L+QG HVPD+ H      DV P+R
Subjt:  YKLYQGKHVPDLVHIGVAEVDVGPSR

A0A5A7UK16 Uncharacterized protein6.1e-1630.84Show/hide
Query:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYR-------KNSISDSRVLSDFNRRRTARERRVFPPSDNFTAEP-HASIRATQDIDAFPA
        L+ KA  +K + ++ P+YPQL+REF  NLP  F    SP+Y+       K +IS + V++ F     +       PS +F A        ++  I+  PA
Subjt:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYR-------KNSISDSRVLSDFNRRRTARERRVFPPSDNFTAEP-HASIRATQDIDAFPA

Query:  FFLTYSHL-------------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFF
          L+  +              +   S+SA   T LY+I      + G FI NQ+ RH+G   VK P+   R    ++L  +  +L  S+ PSS P  L  
Subjt:  FFLTYSHL-------------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFF

Query:  NYKLYQGKHVPDLVHIGVAEVDVGPSR
        +Y+L+Q  H+PD+ H      D+ PSR
Subjt:  NYKLYQGKHVPDLVHIGVAEVDVGPSR

A0A5D3DB71 Reverse transcriptase Ty1/copia-type domain-containing protein1.3e-1529.86Show/hide
Query:  KAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSR------VLSDFNRRRTARE-RRVFPPSDNFTAEPHASIRATQDIDAFP--AFF
        KA   K + N+ P+YPQ +REF  N+P +F +  SPDY+   I   +      V +DF       +     PP++           +T  ++  P  A  
Subjt:  KAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSR------VLSDFNRRRTARE-RRVFPPSDNFTAEPHASIRATQDIDAFP--AFF

Query:  LTYSHL-----------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFNYKL
        + Y+ L           +   SISA   T LYQI      + G FI NQ+ RH+G+  VK P+  LR    ++L  +  +L  ++ P   P  +  +Y+L
Subjt:  LTYSHL-----------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFNYKL

Query:  YQGKHVPDLVH
        +QG HVP++ H
Subjt:  YQGKHVPDLVH

A0A5D3DTI5 Uncharacterized protein3.5e-1630.53Show/hide
Query:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRV-------FPPSDNFTAEPHASIRATQDIDAFPAF
        L+ KA   K + N+ P+YPQL+REF  NLP +F    S DY+   I   + +          E  V        P ++           +T  ++  PA 
Subjt:  LLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRV-------FPPSDNFTAEPHASIRATQDIDAFPAF

Query:  FLTYSHL-------------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFN
         L+  +              +   SISA   T LYQI      N G FI NQ+ RH+G   VK P+ FLRL   ++L  +  +L  ++ P   P  +  +
Subjt:  FLTYSHL-------------AFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPSSVPHALFFN

Query:  YKLYQGKHVPDLVHIGVAEVDVGPSR
        ++L+QG HVPD+ H      DV P+R
Subjt:  YKLYQGKHVPDLVHIGVAEVDVGPSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCTCTTTTCACTTTGTTGACAATGGTCAGGTTTGGCAATATATCGTGCATTGAATTATTGTTGAAAAGGAGCTCTCCAAGCAAGCTCAAGACTGCTTCG
AGATCGTGGGTTTTATTAATTAAAGCTAAACATGTAAAATTTGTACTAAATCTTGATCCCTACTATCCACAGTTGGTCCGTGAATTCCATGCTAATCTTCCGAAG
CAATTTGGAAGTGTTGGCAGTCCTGACTATCGCAAGAACTCCATAAGTGACAGCAGAGTTCTCTCAGACTTCAACCGGAGACGAACAGCTCGAGAGAGAAGAGTC
TTCCCTCCGTCGGACAACTTCACAGCAGAACCTCACGCTTCCATCCGGGCGACTCAAGACATTGACGCCTTTCCTGCTTTCTTTCTTACTTACTCACACCTTGCG
TTTGTAATTTCCATTTCCGCAATTCATTACACAACACTCTATCAAATTGGTACTGGATCTTCTTTCAACTATGGTGTGTTCATCCTAAATCAAGTAACTAGGCAC
ATTGGCTATCAAGCTGTAAAGTTTCCTCTGTGTTTCCTTCGTCTGATTTGTGGGATAATCCTCGCTCAGGACCCTGATATTTTGCTTCCTTCAGAAACCCCTAGT
TCTGTTCCTCATGCTCTCTTCTTCAACTACAAACTGTACCAGGGAAAACATGTTCCAGATCTTGTGCATATTGGTGTGGCTGAGGTTGATGTTGGACCAAGTCGA
GTTTTTCTTGATACTCCGTGTGGTAAAAAGATAGTTCATGTTCTTGCTAATGAATCTAAAGAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTATCTCTTTTCACTTTGTTGACAATGGTCAGGTTTGGCAATATATCGTGCATTGAATTATTGTTGAAAAGGAGCTCTCCAAGCAAGCTCAAGACTGCTTCG
AGATCGTGGGTTTTATTAATTAAAGCTAAACATGTAAAATTTGTACTAAATCTTGATCCCTACTATCCACAGTTGGTCCGTGAATTCCATGCTAATCTTCCGAAG
CAATTTGGAAGTGTTGGCAGTCCTGACTATCGCAAGAACTCCATAAGTGACAGCAGAGTTCTCTCAGACTTCAACCGGAGACGAACAGCTCGAGAGAGAAGAGTC
TTCCCTCCGTCGGACAACTTCACAGCAGAACCTCACGCTTCCATCCGGGCGACTCAAGACATTGACGCCTTTCCTGCTTTCTTTCTTACTTACTCACACCTTGCG
TTTGTAATTTCCATTTCCGCAATTCATTACACAACACTCTATCAAATTGGTACTGGATCTTCTTTCAACTATGGTGTGTTCATCCTAAATCAAGTAACTAGGCAC
ATTGGCTATCAAGCTGTAAAGTTTCCTCTGTGTTTCCTTCGTCTGATTTGTGGGATAATCCTCGCTCAGGACCCTGATATTTTGCTTCCTTCAGAAACCCCTAGT
TCTGTTCCTCATGCTCTCTTCTTCAACTACAAACTGTACCAGGGAAAACATGTTCCAGATCTTGTGCATATTGGTGTGGCTGAGGTTGATGTTGGACCAAGTCGA
GTTTTTCTTGATACTCCGTGTGGTAAAAAGATAGTTCATGTTCTTGCTAATGAATCTAAAGAGAGTTGA
Protein sequenceShow/hide protein sequence
MVSLFTLLTMVRFGNISCIELLLKRSSPSKLKTASRSWVLLIKAKHVKFVLNLDPYYPQLVREFHANLPKQFGSVGSPDYRKNSISDSRVLSDFNRRRTARERRV
FPPSDNFTAEPHASIRATQDIDAFPAFFLTYSHLAFVISISAIHYTTLYQIGTGSSFNYGVFILNQVTRHIGYQAVKFPLCFLRLICGIILAQDPDILLPSETPS
SVPHALFFNYKLYQGKHVPDLVHIGVAEVDVGPSRVFLDTPCGKKIVHVLANESKES